Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B19
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical
           protein F08D12.7 protein.
          Length = 336

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 453 NFCINLKVCFNVAPTCNVFSLTFNFPIVLTKGKELVTNLCGPCLTR 316
           + C ++K CF  A TC   + T+        G EL+T    PC+T+
Sbjct: 62  DLCTDIKTCFKAA-TCKKGAHTYESMRDACDGLELMTGNVQPCMTK 106


>AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical
           protein F56A6.5 protein.
          Length = 191

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -1

Query: 558 ILTSVFVKSKTA--CSNCCLSSGV 493
           I T+  +KSKT   C+NCCLS+G+
Sbjct: 88  ICTACQLKSKTLRICTNCCLSTGI 111


>Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical
           protein F58A4.7b protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 28/99 (28%), Positives = 42/99 (42%)
 Frame = +2

Query: 134 ITVEIVCPTVSEKTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGFLTKYCNESTRIAI 313
           I+VEI  P++S  +PL   P IF ST +     I      AA+ S   T     ST +A+
Sbjct: 322 ISVEISSPSLSTPSPLTAAPIIF-STAVPTQSSILFQTAAAAVTSAMST---GNSTPVAL 377

Query: 314 IRVRHGPHRFVTSSLPFVKTIGKLNVRLNTLHVGATLKH 430
                 PH     +  FV T   L +  +   +   ++H
Sbjct: 378 ------PHHLQGHNSAFVSTQPSLTLSQSMQTIVEAIRH 410


>Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical
           protein F58A4.7a protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 28/99 (28%), Positives = 42/99 (42%)
 Frame = +2

Query: 134 ITVEIVCPTVSEKTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGFLTKYCNESTRIAI 313
           I+VEI  P++S  +PL   P IF ST +     I      AA+ S   T     ST +A+
Sbjct: 320 ISVEISSPSLSTPSPLTAAPIIF-STAVPTQSSILFQTAAAAVTSAMST---GNSTPVAL 375

Query: 314 IRVRHGPHRFVTSSLPFVKTIGKLNVRLNTLHVGATLKH 430
                 PH     +  FV T   L +  +   +   ++H
Sbjct: 376 ------PHHLQGHNSAFVSTQPSLTLSQSMQTIVEAIRH 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,109,095
Number of Sequences: 27780
Number of extensions: 301946
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)