Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B17
         (992 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.25 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   2.3  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    27   5.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   6.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   7.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 471 PPGXPPPPPXXTXPXPXXFXPPP 539
           PPG PPPPP      P    PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +1

Query: 712 PPXXXXPXXPPPGL--XXXPPXPPP 780
           PP    P  PPPG      PP PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 474 PGXPPPPPXXTXPXPXXFXPPPG 542
           P  PPPPP    P      PPPG
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 167 PPXPXPXXPPXXXGPPAPPP 226
           PP P P   P    PP PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 486  PPPPXXTXPXPXXFXPPPGGAXXXPP 563
            PPPP  + P P    P P G    PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176  PXPXXPPXXXGPPAPPP 226
            P P  PP   GPP+ PP
Sbjct: 1716 PPPSAPPMPAGPPSAPP 1732


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 471 PPGXPPPPPXXTXPXPXXFXPPPGGAXXXPP 563
           P   P PPP      P    PPPG A   PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 170 PXPXPXXPPXXXGPPAPPP 226
           P P P   P   GPP PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPP 766



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 167 PPXPXPXXPPXXXGPPAPPP 226
           PP P P       GPP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 474 PGXPPPPPXXTXPXPXXFXPPP 539
           P  PPPPP      P    PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 730 PXXPPPGLXXXPPXPPP 780
           P  PPPG+    P PPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -3

Query: 144 FXFFXFFFFFXXFFFXFFXXFXFXFQPTHVYFIKILRIP 28
           F     FFFF  FF  F   F F F  + ++ +     P
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFP 151


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 91  KKXKKKXXKKKKKXKKXKXK 150
           KK KKK  KKKKK K+   K
Sbjct: 438 KKKKKKNNKKKKKNKRKNIK 457


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 6.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 471 PPGXPPPPP 497
           PP  PPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 21.8 bits (44), Expect(2) = 6.3
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 474 PGXPPPPPXXTXP 512
           P  PPPPP    P
Sbjct: 236 PAPPPPPPPTLPP 248


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = -3

Query: 288 GXRA*AAAGXXLXGGGXXVXXGGGAGGPXXXGGXXGXGXGG 166
           G R     G    GGG     GGG GG     G  G   GG
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 249 GGGXXVXXGGGAGGPXXXGGXXGXGXGG 166
           GGG     GG  G P   GG  G G  G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFG 214



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -2

Query: 562 GGXXXAPPGGGXKXXGXGXVXXGGGGGXPGG 470
           GG    P G G    G G    GG GG PGG
Sbjct: 231 GGFEGGPGGFGGGPGGFGG-GLGGFGGGPGG 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.149    0.526 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,122
Number of Sequences: 5004
Number of extensions: 21020
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)