Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B17
         (992 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.80 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.80
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 471 PPGXPPPPPXXTXPXPXXFXPPPGGAXXXPP 563
           P   P  P   + P P    PPPGG    PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQ-GPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 167 PPXPXPXXPPXXXGPPAPPP 226
           PP P    PP   GPP  PP
Sbjct: 39  PPNPSQGPPPG--GPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +3

Query: 471 PPGXPPPPPXXTXPXPXXFXPPPG 542
           PPG PP  P    P      P  G
Sbjct: 47  PPGGPPGAPPSQNPSQMMISPASG 70


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 474 PGXPPPPPXXTXP 512
           P  PPPPP  + P
Sbjct: 341 PAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.149    0.526 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,627
Number of Sequences: 438
Number of extensions: 5088
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32895408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)