Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B15
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    30   0.48 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.64 

>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 347 WSVFQVAHRSVARWFRVNNLCWIL---TLGKNITPALFSNLIT 228
           W +F  A   ++   RV NL W L    L KN+TP   SN +T
Sbjct: 42  WKMFSKAKSELSNGRRVENLTWRLMSINLQKNLTPNGDSNTLT 84


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = -1

Query: 227 ERSPNLIIEFAMAVKKFIDSEISFLTSFRQAKSLR*PSDATRRHAKRTKHTLDFLKLTDF 48
           E+S +  IE   A    I+ +I  LT     K     SDA++ +A+     LDFL+ T+ 
Sbjct: 6   EKSLSSSIELLKAESTEIEEKIK-LTKILITKVSSISSDASQLYAELIPLLLDFLRNTEV 64

Query: 47  KILRNS 30
            + RNS
Sbjct: 65  NLYRNS 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,624
Number of Sequences: 5004
Number of extensions: 56208
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)