Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B15
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595...    30   2.7  
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056...    30   2.7  
08_02_1522 + 27651983-27652690                                         29   4.7  
08_02_1241 - 25511462-25511614,25511690-25512499                       28   8.3  
05_04_0126 + 18252594-18256922                                         28   8.3  

>04_04_1224 +
           31858110-31858338,31859180-31859301,31859398-31859507,
           31859661-31859725,31859940-31860004,31860387-31860632,
           31861212-31861313,31861484-31861534,31862015-31862105,
           31862777-31862841
          Length = 381

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/65 (23%), Positives = 26/65 (40%)
 Frame = +3

Query: 294 IHTKPTCNGSVCHLEDRPRHVKRESREITELPHSSLRRCYSKQHGRPEIDRRKQPDRNLI 473
           +HTK  C   VC       +VK ++  +   P   +++C +          R  PD  + 
Sbjct: 121 LHTKDVCRTPVCDTVAASAYVKPQTSHVNVFPLKEVKKCSTPGEETNISIGRSSPDVKIS 180

Query: 474 PILTL 488
           P  T+
Sbjct: 181 PPATV 185


>03_05_0841 -
           28104977-28105142,28105439-28105502,28105586-28105655,
           28105743-28105852,28106217-28106295,28106610-28106691,
           28106791-28106879,28107351-28107425,28107728-28107862,
           28108018-28108163,28108380-28108491
          Length = 375

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +1

Query: 52  SVNLRKSSVCFVRFACRRVAS-DGYRSDFACLKLVKKLISESINFLTAMANSIMRLGLRS 228
           S NLRK SVC V + C      + ++      + +  L  +    LT     ++RL LR 
Sbjct: 66  SRNLRKCSVCRVAWYCGSACQREEWKLHQLECRAIAALTEDRKKMLTPTIRLMVRLVLRR 125

Query: 229 VIKLEKSAGV--MFLPSVKIQHKLFT 300
            ++ +K A +  + LPS ++  K  T
Sbjct: 126 KLQDDKMANLVQLILPSFELDLKEIT 151


>08_02_1522 + 27651983-27652690
          Length = 235

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 297 HTKPTCNGSVCHLED-RPRHVKRESREITELPHSSLRRCYSKQHGRPEIDRRKQPDRNLI 473
           H+K T    V + ED R   + RE+REIT     S     SKQ   P++    +  +  I
Sbjct: 133 HSKKTLKKVVSNKEDCRIVKLLREAREITTSLFESTTHLLSKQIAMPKLSLISKAFQKKI 192

Query: 474 PIL 482
           P++
Sbjct: 193 PVI 195


>08_02_1241 - 25511462-25511614,25511690-25512499
          Length = 320

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 145 LDRRNHSDSHRTRRGDTQSEQNTRSIFLN*LISKS*GIP 29
           L+  ++ +SH   +G+ QSE+NT  I L+  I+KS G P
Sbjct: 179 LNAEDNLNSHE--KGNQQSEENTEEILLDPDIAKSKGRP 215


>05_04_0126 + 18252594-18256922
          Length = 1442

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 365 IAGDHRVASQLIKTLLQQTTWPTGNRQKETAR 460
           I  +H++A  +++ LL+ +  P GN  KE A+
Sbjct: 451 ILNNHKIALDIVRELLRWSQLPEGNSVKELAK 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,508,673
Number of Sequences: 37544
Number of extensions: 392910
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)