Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B15
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-1|CAD54154.1|  547|Caenorhabditis elegans Hypothetical pr...    32   0.60 
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    28   7.4  
U13646-2|AAP68930.1|  295|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>Z78065-1|CAD54154.1|  547|Caenorhabditis elegans Hypothetical
           protein T09E8.1d protein.
          Length = 547

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 330 HLEDRPRHVKRESREITELPHSSLRRCYSKQHGRPEIDRRKQPDRNLIPI 479
           HL   PRH+     +I  +  SS  R    Q G P ++R+K+P+  + P+
Sbjct: 41  HLPPAPRHLSSSHHQIETISGSSKLRA---QSGSPALNRKKRPEIAVAPL 87


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 49  KSVNLRKSSVCFVRFACRRVASDGYRSDFACLKLVKKLISESINFLTAMANS 204
           ++V LR+    + R  C  V SD Y SDFA   + +   SE+ ++LTA  +S
Sbjct: 325 ENVYLRQQDEDYERDRCF-VVSDSYSSDFASTAIPEASESENSDYLTASVSS 375


>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 309 TCNGSVCHLEDRPRHVKRESREITELPHSSLRRCYSKQH-GRPEIDR 446
           TC  S C+  D  R +  +  E  E+ +S    C  K H  RP++ +
Sbjct: 160 TCMNSTCNAPDLDRRMADDMCEAIEMKNSPFMACQFKIHKERPDLSK 206


>U13646-2|AAP68930.1|  295|Caenorhabditis elegans Hypothetical
           protein ZK783.2 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 58  NLRKSSVCFVRFACRRVASDGYRSDFACLKLVKKLISESI 177
           N+   S CF  F CR     G++S   C+ L+ ++  + +
Sbjct: 232 NIEMESTCFASFTCRA----GFQSAIVCVTLLNRMDGDQV 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,440
Number of Sequences: 27780
Number of extensions: 328664
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)