Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B14
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.94 
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   3.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -3

Query: 475 PPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPK 302
           PPTS TV L+  Y   + +   + +VVTI+     +R  V    ++    + I  LP+
Sbjct: 290 PPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPR 347


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 283 ANIFPILNYYEYNRCWSELELRSPPSIYYAQIVIITRLPI 164
           +N  P+ N Y YN  ++     +   +YY  I  I ++PI
Sbjct: 83  SNNNPLSNNYNYNNNYNNYNKHNYNKLYY-NINYIEQIPI 121


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 122 NLHFQKQSRIKEKT 81
           NL F KQS +KE T
Sbjct: 374 NLSFDKQSLLKENT 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,181
Number of Sequences: 438
Number of extensions: 5095
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)