Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B13
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0149 - 31987183-31987630,31987813-31987874                       28   1.4  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.7  
04_01_0154 - 1775693-1775942,1776834-1777588                           29   3.9  
08_01_0156 - 1233431-1233925                                           29   6.8  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.8  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.0  
06_03_0218 + 18219956-18220555                                         28   9.0  

>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect(2) = 1.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 686 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 585
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109



 Score = 21.4 bits (43), Expect(2) = 1.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 776 RAXGRXERGXVHTAQLGANDXH 711
           R  GR ERG V  A   A D H
Sbjct: 21  RIHGREERGDVAAAGEDAADAH 42


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +1

Query: 478 CWRFSIGSAPLTSITKIDAQVRXGETRQDYKDTRRXPLEAPSCALLFRPCRLP 636
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>04_01_0154 - 1775693-1775942,1776834-1777588
          Length = 334

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
 Frame = -1

Query: 750 VXAHSPAWSERXTPD*DTYSVSYEKAPRFPKGERRTG---IR*AAGSEQESARGSFQGXT 580
           V A +   ++   PD D  S   + APR P  ER  G    R AA S +   RG   G  
Sbjct: 48  VAAGAAGGADAVAPDADPASPVEDLAPRRPDRERGGGGAARRRAASSSRRRRRGKSVGG- 106

Query: 579 PGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 472
           P       G     L +    ARQ GGA  +  + R
Sbjct: 107 PSSRRRRRGKTAGGLKLPTTAARQDGGATRRNSSRR 142


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 731 LGANDXHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 558
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 557 RVSPXLT 537
           R SP ++
Sbjct: 149 RASPTVS 155


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 310 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 465
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 259 NESAN---ARGEAVCVLGALPLPRSLTRCAR 342
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 665 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 570
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,162,292
Number of Sequences: 37544
Number of extensions: 457639
Number of successful extensions: 1338
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)