Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B12
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0665 - 16774043-16774522                                         31   1.4  
04_03_0801 - 19828175-19828770,19828913-19828994                       31   1.4  
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     31   1.4  
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683...    29   4.3  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   7.5  
03_02_0131 - 5796564-5796605,5797188-5797421,5798415-5798717,579...    28   9.9  
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356     28   9.9  

>05_03_0665 - 16774043-16774522
          Length = 159

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 427 PPXGGXCXPPPPXXKKXFFIXXGGGNXXGGGGG 525
           PP      PPPP  ++  ++  GG    GGGGG
Sbjct: 76  PPPPRLALPPPPG-RRDGYLGGGGAGGGGGGGG 107


>04_03_0801 - 19828175-19828770,19828913-19828994
          Length = 225

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +1

Query: 424 PPPXGGXCXPPPPXXKKXFFIXXGGGNXXGGGGG 525
           P P  G C PPPP  K    +   GG   GG GG
Sbjct: 147 PKPCCGGCVPPPPRCKCG--VDGCGGGCSGGHGG 178


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +1

Query: 451 PPPPXXKKXFFIXXG---GGNXXGGGGG 525
           PPPP     FF+      GGN  GGGGG
Sbjct: 233 PPPPAIPPHFFLDPSIGVGGNGGGGGGG 260


>06_01_0893 -
           6834350-6834464,6835042-6835218,6835301-6835350,
           6836348-6836416,6836495-6836593,6836681-6836759,
           6837604-6837704,6838645-6838713,6839548-6839588,
           6839793-6841159,6841472-6841575,6841914-6842351,
           6843040-6843567
          Length = 1078

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 451 PPPPXXKKXFFIXXGGGNXXGGGGG 525
           PPPP  KK      GGG   GGGGG
Sbjct: 23  PPPPVSKKG-----GGGGGGGGGGG 42


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 423 PPPXGGXMXSPPPXXKKXXFYXXGXGKXKXGGGGGXF 533
           P P GG   +PPP       Y  G G    GGGGG +
Sbjct: 386 PMPGGGGPGAPPP-------YHGGGGGGGGGGGGGGY 415



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 424 PPPXGGXCXPPPPXXKKXFFIXXGGGNXXGGGGGXXF 534
           P P GG    PPP          GGG   GGGGG  +
Sbjct: 386 PMPGGGGPGAPPPYH-------GGGGGGGGGGGGGGY 415


>03_02_0131 -
           5796564-5796605,5797188-5797421,5798415-5798717,
           5799260-5799847,5800594-5800749,5800861-5800919,
           5801935-5802262
          Length = 569

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 451 PPPPXXKKXFFIXXGGGNXXGGGGG 525
           PPPP       +  G G   GGGGG
Sbjct: 34  PPPPPLALQGVVTPGAGRRGGGGGG 58


>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
          Length = 444

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 523 PPPPXFXFPXPXK*KXXFFXXGGGXNIXPPXG 428
           PPPP F F  P      F   GG   +  P G
Sbjct: 101 PPPPVFPFVAPPSSPASFLQSGGASIVQSPVG 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,585,484
Number of Sequences: 37544
Number of extensions: 217417
Number of successful extensions: 2410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2250
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)