Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B12
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    35   0.059
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   8.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   8.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   8.9  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 35.1 bits (77), Expect = 0.059
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 436 GGXCXPPPPXXKKXFFIXXGGGNXXGGGGG 525
           GG C PPPP          GGG   GGGGG
Sbjct: 49  GGGCAPPPPPPACGGGCGGGGGGCGGGGGG 78



 Score = 31.5 bits (68), Expect = 0.72
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 436 GGXCXPPPPXXKKXFFIXXGGGNXXGGGGG 525
           GG C PPPP          GGG   GG GG
Sbjct: 106 GGGCAPPPPPPACGGGCGGGGGGCGGGCGG 135


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 436 GGXCXPPPPXXKKXFFIXXGGGNXXGGGGG 525
           GG C PPP           GGG   GGGGG
Sbjct: 69  GGGCAPPPAPCGGG--CGGGGGGCGGGGGG 96



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 436 GGXCXPPPPXXKKXFFIXXGGGNXXGGGGG 525
           GG C PPP           GGG   GGGGG
Sbjct: 45  GGGCAPPPAPCGGG---CGGGGGGCGGGGG 71


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 436 GGXCXPPPPXXKKXFFIXXGGGNXXGGGGG 525
           GG C PPP           GGG   GGGGG
Sbjct: 69  GGGCAPPPAPCGGG--CGGGGGGCGGGGGG 96



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 436 GGXCXPPPPXXKKXFFIXXGGGNXXGGGGG 525
           GG C PPP           GGG   GGGGG
Sbjct: 45  GGGCAPPPAPCGGG---CGGGGGGCGGGGG 71


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 424 PPPXGGXCXPPPP 462
           PPP  G C PPPP
Sbjct: 761 PPPPPGGCPPPPP 773


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 424 PPPXGGXCXPPPP 462
           PPP  G C PPPP
Sbjct: 761 PPPPPGGCPPPPP 773


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 424 PPPXGGXCXPPPP 462
           PPP  G C PPPP
Sbjct: 344 PPPPPGGCPPPPP 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,086,917
Number of Sequences: 27780
Number of extensions: 100551
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)