Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B08
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       33   0.004
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.73 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 33.1 bits (72), Expect = 0.004
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 734 PPPPPXKNXKKXSPPXGXXPPPPXAXNPPGXPPXXTPGRXP 856
           P P P  +    +P  G  PP P    PPG PP   P + P
Sbjct: 21  PGPQPSPHQSPQAPQRGS-PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 15/54 (27%), Positives = 17/54 (31%)
 Frame = +2

Query: 746 PXKNXKKXSPPXGXXPPPPXAXNPPGXPPXXTPGRXPXXXPXPXXXXTPPPXPP 907
           P    +   P  G   P P     P  P   +P   P   P P     PP  PP
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPN-PSQGPPPGG---PPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 662 SXTPPQXAPPXPP 700
           S TPP+ APP PP
Sbjct: 335 SDTPPKPAPPPPP 347



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 669 PPXKXPPPXPPXPXG 713
           PP   PPP PP   G
Sbjct: 338 PPKPAPPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 684  PPPXPPXPXGG 716
            PPP PP P  G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,378
Number of Sequences: 438
Number of extensions: 7066
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)