Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B07
         (946 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   2.9  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   8.9  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   8.9  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 615 MGSRNQTMKKQSREQGWEGLLAGFQCRRLLAAF 517
           + SRNQ +KKQ     W+ +  GF  R +   F
Sbjct: 353 LASRNQALKKQRIRLYWKSISKGFFYRVIFVGF 385


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 120 EIAYSVAEDGPQPVSRTYQYRKVM 191
           E+  ++AED P+ VS+ Y+Y  V+
Sbjct: 665 ELDLALAEDAPEFVSKVYRYLHVL 688


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 260 HQLLEFVETAVDASA-SLALKHRFHHFAILISARDWLRTVFRDR--IRDLV 117
           +QL+E    A  A+    ALK  F+    L +ARDW R V  DR   RDLV
Sbjct: 822 NQLIESSREAFSATLFKAALKSCFYD---LQNARDWYREVTADRKMHRDLV 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,889
Number of Sequences: 5004
Number of extensions: 60270
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)