Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_B07
(946 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0298 - 22873933-22874040,22874807-22875407,22875517-228755... 33 0.33
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 31 1.3
03_02_0375 + 7880543-7880872,7881291-7881365,7881445-7881531,788... 31 1.8
10_02_0003 + 4022220-4022900 30 3.1
10_08_0979 - 22000645-22000923,22000991-22001896 29 4.1
11_06_0629 + 25646268-25646591 29 5.4
05_03_0135 - 8802462-8803355 29 5.4
03_05_0774 - 27615899-27617134 29 5.4
11_01_0106 - 792190-792730,793905-794018,794206-794540 29 7.1
10_05_0006 + 7752426-7752497,7752663-7753223 28 9.4
06_03_0570 - 22363197-22363588,22363755-22366782 28 9.4
>03_05_0298 -
22873933-22874040,22874807-22875407,22875517-22875596,
22875685-22875816
Length = 306
Score = 33.1 bits (72), Expect = 0.33
Identities = 27/87 (31%), Positives = 38/87 (43%)
Frame = +2
Query: 236 SRRTQGADGQRSTI*RRECSQIGKS*YLGTDRSPSSQAEAPASLVTQPYRGCGSLQSRIY 415
SRR R T R ECS++ + R + AS + + S SR+
Sbjct: 130 SRRAHATSASRPTRMRFECSKMATGSW--RKRGRMKLGDDAASALWSEWHHPPSHASRL- 186
Query: 416 SRRQRSFPLSGFNSWCGREAGHSTNDP 496
+RR+ PLS F+S AGH+ DP
Sbjct: 187 ARRRCPQPLSSFSSLPSELAGHTAPDP 213
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = -2
Query: 660 PMELLSVEASVTPEEMGSRNQTMKKQSREQGWEGLLAGFQCRRLLAAFRSVCARGGSLVE 481
P ELL+ +A+ E+ NQ +K+Q + G + + R L R G + +
Sbjct: 243 PRELLAGKAATAANEIAQENQAVKRQKLDDGRTRQILNVKTRTLPHKGRGGGLAGSTEMS 302
Query: 480 CPASRPHQE 454
A R H++
Sbjct: 303 LSAMRKHRD 311
>03_02_0375 +
7880543-7880872,7881291-7881365,7881445-7881531,
7881619-7881723,7881806-7881876,7882552-7882840
Length = 318
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 143 RRSAASLAHLSISQSDETDA*AQETRSHQPLSRRTQGADGQRSTI 277
R A A S ++ DE D+ + H PLSR +G + Q+ST+
Sbjct: 75 RAKKAGNAGASKAKKDEDDSGDDDDDYHVPLSRSNKGKEKQKSTV 119
>10_02_0003 + 4022220-4022900
Length = 226
Score = 29.9 bits (64), Expect = 3.1
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +2
Query: 209 QETRSHQPLSRRTQGADGQRSTI*RRECSQIGKS*YLGTDRSPSSQAEAPASLVTQPYRG 388
QE + +RR + A Q S+I C S TD +PS+ + A AS++ +
Sbjct: 120 QEQQQAYEAARRAKAASTQSSSI---RCVTSNPSLSTSTDPAPSATSYASASVLRRAAFD 176
Query: 389 CGSL 400
CGS+
Sbjct: 177 CGSI 180
>10_08_0979 - 22000645-22000923,22000991-22001896
Length = 394
Score = 29.5 bits (63), Expect = 4.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 551 ASKPSQPCSLDCFFIVWLREPIS 619
A S+PC LDC F+ L++P S
Sbjct: 355 ADGSSEPCHLDCIFLQMLQQPYS 377
>11_06_0629 + 25646268-25646591
Length = 107
Score = 29.1 bits (62), Expect = 5.4
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = -3
Query: 842 KGPXQXPXRLXEXNVTDRGRVTXXVXXGXSGNRSAGSIRHRRLXGPPHSRCFGQ*GVHAA 663
K P P + RGR + G GS RHR L P +R G+ G AA
Sbjct: 31 KEPPPLPPNPFSATESSRGRHRRPICGGRKARGGGGSHRHRLLHPPDLAREEGEKGRRAA 90
>05_03_0135 - 8802462-8803355
Length = 297
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 703 HTADALGSEVFMLQSNGVAVCRGIGDAGGD 614
HT A+G ++ QS G+ V IG GG+
Sbjct: 76 HTVSAVGPDIKHCQSRGILVLLAIGGQGGE 105
>03_05_0774 - 27615899-27617134
Length = 411
Score = 29.1 bits (62), Expect = 5.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 485 TNDPPRAQTERNAASSRRH*NPASK 559
T+D PRA E ASSR NPAS+
Sbjct: 275 TSDAPRAPAEAAGASSRGRDNPASR 299
>11_01_0106 - 792190-792730,793905-794018,794206-794540
Length = 329
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 636 ASVTPEEMGSRNQTMKKQSREQG-WEGLLAGFQCRRLLAAFRSVC 505
A+ +P S + M S E G W G + CR+++AA C
Sbjct: 217 AAESPAATSSSSSNMVMTSSETGNWSGQHGAYACRQMIAADEEYC 261
>10_05_0006 + 7752426-7752497,7752663-7753223
Length = 210
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 455 SWCGREAGHSTNDPPR--AQTERNAASSRRH*NPASKP 562
SWCG + GH+ + P+ + ER AA+S R + +P
Sbjct: 163 SWCGLKDGHNVSTCPKNPSNFERLAAASSRGKRKSGQP 200
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 217 ALASTAVSTNSRS*WSALYNLKERM*PNWKKLISWN 324
+L+STA+ S AL LK R+ N + L SWN
Sbjct: 28 SLSSTALDDESNKDLQALLCLKSRLSNNARSLASWN 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,225,950
Number of Sequences: 37544
Number of extensions: 501991
Number of successful extensions: 1426
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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