Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B07
         (946 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.     50   2e-06
AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cel...    50   2e-06
U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical p...    30   2.1  
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr...    30   2.8  
U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop heli...    30   2.8  
U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop heli...    30   2.8  
U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.
          Length = 173

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +3

Query: 192 KPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 332
           KP++E+KRRARIN+ L +LK++++          +K EKADILE+ V
Sbjct: 26  KPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADILEMAV 72


>AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cell
           lineage protein 22 protein.
          Length = 173

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +3

Query: 192 KPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 332
           KP++E+KRRARIN+ L +LK++++          +K EKADILE+ V
Sbjct: 26  KPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADILEMAV 72


>U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical
           protein C45G9.4 protein.
          Length = 292

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +2

Query: 446 GFNSWCGREAGHSTNDPPRAQTERNAASSRRH*NPASKPSQPCSLDCFFIVWLREPISSG 625
           G    C ++     +     +T+R+A        P   PS+P ++       L++PI SG
Sbjct: 44  GLFGCCAKKRKTKRSKKSAKRTKRSAPKKAPKKAPMKAPSKPAAIPQQAQASLQKPIQSG 103

Query: 626 VTDASTDSNSI 658
           + DA   + ++
Sbjct: 104 IVDADAKAKTV 114


>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
           protein R04A9.2 protein.
          Length = 1057

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 320 GTDRSPSSQAEAPASLVTQPYRGCGSLQSRIYSR 421
           GT + PSSQ + P  L T P    GSL  RI  R
Sbjct: 36  GTAKKPSSQQQPPKPLFTTPGSQQGSLGGRIPKR 69


>U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop helix
           protein 27 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 168 TYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 332
           T   R+ +K   E+ RR + + C  ELK  +++      E   KLE+  ILE+ +
Sbjct: 142 TESERRKVKTEREKIRRKKQDDCYAELKFFILNKQMGSYEQRLKLERITILEIII 196


>U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop helix
           protein 25 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 168 TYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 332
           T   R+ +K   E+ RR + + C  ELK  +++      E   KLE+  ILE+ +
Sbjct: 134 TESERRKVKTEREKIRRKKQDDCYAELKFFILNKQMGSYEQRLKLERITILEIII 188


>U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical
           protein F07E5.5 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 138 AEDGPQPVSRTYQYRKVMK-PMLERKRRA 221
           AEDG +P+S+T Q RK+ K   +ERK RA
Sbjct: 50  AEDGDKPMSKT-QKRKLKKAAAIERKERA 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,907,571
Number of Sequences: 27780
Number of extensions: 368429
Number of successful extensions: 976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)