Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B05
         (944 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         29   1.3  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   4.1  
07_03_0177 - 14770777-14772045                                         29   5.4  
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701...    29   5.4  
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797     29   5.4  
05_04_0126 + 18252594-18256922                                         29   7.1  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   7.1  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    28   9.4  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect(2) = 1.3
 Identities = 20/72 (27%), Positives = 26/72 (36%)
 Frame = +1

Query: 625 PPPPWTNXHKNRPSIXRWXNPTGL*KYQAFPLSXFXLPXSPXCFEPAXYRXXXPXFSPSR 804
           PPPP       +PS   W  P  +    A P +      SP   + +  R   P  SP+ 
Sbjct: 296 PPPPSPPPPPQQPSQRYWTPPPAITPEPAKPAAGKPTSSSPPSTKDSP-RPPLPAPSPAA 354

Query: 805 XGGXSPXPTXXP 840
            GG    P   P
Sbjct: 355 NGGDPRLPATTP 366



 Score = 21.0 bits (42), Expect(2) = 1.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 589 VKRPRLLAFFHXPPPP 636
           VK PR+L     PPPP
Sbjct: 255 VKMPRVLEPKPSPPPP 270


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
 Frame = +1

Query: 745 PXCFEPAXYRXXXPXFSPSRXGGXSPXPTXXPPGXXXFPXR---GXGPPPXXG 894
           P    PA      P  SPS  G  S  P   PP     P     G GPPP  G
Sbjct: 323 PPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPG 375


>07_03_0177 - 14770777-14772045
          Length = 422

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 20/63 (31%), Positives = 21/63 (33%)
 Frame = -2

Query: 922 GLXGGFXXXPXXXGGGPPPGXGXPXXXGXLXWGKGXXXXFGKGKRXXRXSGXRQVRNXGG 743
           GL GGF       GGG   G       G +  G G    FGKG       G       GG
Sbjct: 258 GLGGGFGKGGGLGGGGGLGGGEDGGLGGGIGKGGGIGGGFGKGGGLGGGGGLGGGGGLGG 317

Query: 742 XEG 734
             G
Sbjct: 318 GSG 320


>06_03_1121 +
           27767707-27768065,27768612-27769034,27770013-27770175,
           27770271-27770381,27770895-27770963,27771117-27771203,
           27771967-27772752
          Length = 665

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = -2

Query: 913 GGFXXXPXXXGGGPPPGXGXPXXXGXLXWGKGXXXXFGKGKRXXRXS 773
           GG    P   GGGP P    P   G    G G     G G+   R S
Sbjct: 12  GGLDQPPAGGGGGPAPHSSDPGGVGGGGGGGGPGDGGGHGRGRGRGS 58


>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
          Length = 216

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = +1

Query: 715 PLSXFXLPXSPXC-FEPAXYRXXXPXFSPSRXG--GXSPXPTXXPPGXXXFPXRGXGPPP 885
           P++   +P  P C + P   +   P   P      G SP P+  P G    P +   PPP
Sbjct: 44  PVAADDVPPPPYCVYPPPPTKPALPAPLPPTPASPGDSP-PSIAPAGNPPTPAQAGAPPP 102

Query: 886 XXGVGXXNP 912
               G  +P
Sbjct: 103 SIAPGTGSP 111


>05_04_0126 + 18252594-18256922
          Length = 1442

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 489  VSAHSKAVIRLSXESGDNPGXNX*AKGXQKXRNRKKAAFAGVFP 620
            ++AH+K +I    +  D P      KG     N+KK+AF  +FP
Sbjct: 1401 INAHNKKLIHKRTQVQDEP------KGGPTLANKKKSAFFSIFP 1438


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +2

Query: 788 PFPLPEXXGXPLXPP*XPXGXGXSXSGGXAPPPXXGXVSKTP 913
           P P P   G P  PP  P G      GG  PPP  G  S+ P
Sbjct: 353 PPPPPPPKG-PSPPPPPPPG---GKKGGPPPPPPKGGASRPP 390


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 18/58 (31%), Positives = 19/58 (32%)
 Frame = +1

Query: 736 PXSPXCFEPAXYRXXXPXFSPSRXGGXSPXPTXXPPGXXXFPXRGXGPPPXXGVGXXN 909
           P +P    P       P   P   GG  P P   PP     P R   PPP  G    N
Sbjct: 277 PQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPP--PPPLANGPPRSIPPPPMTGGAMAN 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,050,207
Number of Sequences: 37544
Number of extensions: 298389
Number of successful extensions: 748
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)