Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_B05
(944 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.042
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.042
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.042
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 31 1.6
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 30 2.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.9 bits (79), Expect = 0.042
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +2
Query: 764 PXTGXPXXPFPLPEXXGXPLXPP*XPXGXGXSXSGGXAPPPXXG 895
P TG P P LP G P PP P G +GG PPP G
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPP--PPGGLPPITGGPPPPPPPG 749
Score = 34.7 bits (76), Expect = 0.097
Identities = 24/62 (38%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +2
Query: 764 PXTGXPXXPFP---LPEXXGXPLXPP*XPXGXGXSXSGGXAPPPXXGXVSKTPX*TPXVG 934
P TG P P P LP G P PP P G SGG PPP P P G
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPP--PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 935 PF 940
F
Sbjct: 779 GF 780
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = +2
Query: 764 PXTGXPXXPFPLPEXXGXPLXPP*XPXGXGXSXSGGXAPPPXXG 895
P +G P P P P G P PP P G GG PPP G
Sbjct: 753 PISGGPPPPPPPP--GGCPPPPPPPPPG---GFKGGPPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.9 bits (79), Expect = 0.042
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +2
Query: 764 PXTGXPXXPFPLPEXXGXPLXPP*XPXGXGXSXSGGXAPPPXXG 895
P TG P P LP G P PP P G +GG PPP G
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPP--PPGGLPPITGGPPPPPPPG 749
Score = 34.7 bits (76), Expect = 0.097
Identities = 24/62 (38%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +2
Query: 764 PXTGXPXXPFP---LPEXXGXPLXPP*XPXGXGXSXSGGXAPPPXXGXVSKTPX*TPXVG 934
P TG P P P LP G P PP P G SGG PPP P P G
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPP--PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 935 PF 940
F
Sbjct: 779 GF 780
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = +2
Query: 764 PXTGXPXXPFPLPEXXGXPLXPP*XPXGXGXSXSGGXAPPPXXG 895
P +G P P P P G P PP P G GG PPP G
Sbjct: 753 PISGGPPPPPPPP--GGCPPPPPPPPPG---GFKGGPPPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.9 bits (79), Expect = 0.042
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +2
Query: 764 PXTGXPXXPFPLPEXXGXPLXPP*XPXGXGXSXSGGXAPPPXXG 895
P TG P P LP G P PP P G +GG PPP G
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPP--PPGGLPPITGGPPPPPPPG 332
Score = 34.7 bits (76), Expect = 0.097
Identities = 24/62 (38%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +2
Query: 764 PXTGXPXXPFP---LPEXXGXPLXPP*XPXGXGXSXSGGXAPPPXXGXVSKTPX*TPXVG 934
P TG P P P LP G P PP P G SGG PPP P P G
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPP--PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361
Query: 935 PF 940
F
Sbjct: 362 GF 363
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = +2
Query: 764 PXTGXPXXPFPLPEXXGXPLXPP*XPXGXGXSXSGGXAPPPXXG 895
P +G P P P P G P PP P G GG PPP G
Sbjct: 336 PISGGPPPPPPPP--GGCPPPPPPPPPG---GFKGGPPPPPPPG 374
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 30.7 bits (66), Expect = 1.6
Identities = 33/121 (27%), Positives = 36/121 (29%), Gaps = 14/121 (11%)
Frame = +1
Query: 616 FHXPPPPWTNXHKNRPSIXRWXNPTGL*KYQAFPLSXFXLPXSPXCFEPAXYRXXXPXFS 795
F PPPP N+P I P P+ F P P CF PA P F
Sbjct: 19 FFLPPPPCFGIGCNQPPIVIAGPPPCFDCPPPAPI--FVAPPPPPCFGPAC---PPPCFG 73
Query: 796 PSRX--------------GGXSPXPTXXPPGXXXFPXRGXGPPPXXGVGXXNPXLNPXXG 933
P+ G P P P P GPPP G P P
Sbjct: 74 PACVPLAPIIVNGPPPCFGPACPPPCFGPACAPPAPIIVNGPPPCFGPACPPPCFGPACA 133
Query: 934 P 936
P
Sbjct: 134 P 134
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +1
Query: 745 PXCFEPAXYRXXXPXFSPSRXGGXSPXPTXXPPGXXXFPXRGXGPPPXXGVGXXNPXLNP 924
P C PA P P G P P P P GPPP G P P
Sbjct: 102 PACAPPAPIIVNGP---PPCFGPACPPPCFGPACAPSAPIIVNGPPPCFGPACPPPCFGP 158
Query: 925 XXGP 936
P
Sbjct: 159 ACAP 162
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +1
Query: 793 SPSRXGGXSPXPTXXPPGXXXFPXRGXGPPPXXGVGXXNPXLNP 924
S S G P PPG P G GP P G P NP
Sbjct: 167 SISSPGPAGPAGPPGPPGPDGAPGGGSGPGPAGPAGPPGPDGNP 210
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +1
Query: 793 SPSRXGGXSPXPTXXPPGXXXFPXRGXGPPPXXGVGXXNPXLNP 924
S S G P PPG P G GP P G P NP
Sbjct: 167 SISSPGPAGPAGPPGPPGPDGAPGGGSGPGPAGPAGPPGPDGNP 210
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Frame = +1
Query: 745 PXCFEPAXYRXXXPXFSPSRXGGXSPXPTXXP--PGXXXFPXRGXG---PPPXXGVGXXN 909
P F P P P GG P P P PG P G G PPP G G
Sbjct: 387 PGAFAPPPSAFGAPQ-GPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYG 445
Query: 910 P 912
P
Sbjct: 446 P 446
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 779 PXXPFPLPEXXGXP-LXPP*XPXGXGXSXSGGXAPPPXXG 895
P P P G P + PP P G GG PPP G
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 340
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 779 PXXPFPLPEXXGXP-LXPP*XPXGXGXSXSGGXAPPPXXG 895
P P P G P + PP P G GG PPP G
Sbjct: 311 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 350
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,484
Number of Sequences: 27780
Number of extensions: 224335
Number of successful extensions: 626
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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