Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B04
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 629 PPXTXGXXXPPPPPXPP 679
           PP   G   PPPPP PP
Sbjct: 767 PPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = +2

Query: 605 PXRGGGXXPPXTXGXXX--PPPPPXPP 679
           P  GG   PP   G     PPPPP PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 296 PPXGGXXGXPXRXPXXPXXXGGKKXXPPPFXPPP 397
           PP     G P   P  P   G     PPP  PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP--PPP 783



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 336 PXXPXXGGEKXFXPPPXPPPPXGXXXXG 419
           P  P   G     PPP PPPP      G
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = +2

Query: 602 PPXRGGGXXPPXTXGXXXP--PPPPXPPR 682
           PP R     PP   G      PPPP PPR
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
 Frame = +2

Query: 602  PPXRGGGXXPPXTXGXXXPPPP-PXPPRXXXXPXP 703
            PP R     PP       PPPP   PP     P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 336 PXXPXXGGEKXFXPPPXPPP 395
           P  P  G E    PPP PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,559
Number of Sequences: 5004
Number of extensions: 22707
Number of successful extensions: 211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)