Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B03
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   180   3e-46
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   176   3e-45
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    34   0.024
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.38 
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    26   6.2  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   6.2  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   8.2  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  180 bits (437), Expect = 3e-46
 Identities = 91/167 (54%), Positives = 107/167 (64%)
 Frame = +3

Query: 252 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 431
           GT+KL  +PRP M +C+LGD    D AK   V  M                         
Sbjct: 50  GTIKLPNVPRPNMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAF 109

Query: 432 XXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 611
             SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVG
Sbjct: 110 IASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVG 169

Query: 612 HVDMTPDELAXNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPXKLY 752
           HVDM  ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P +LY
Sbjct: 170 HVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216



 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 34/52 (65%), Positives = 40/52 (76%)
 Frame = +2

Query: 107 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGHCK 262
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSG  K
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  176 bits (429), Expect = 3e-45
 Identities = 88/167 (52%), Positives = 107/167 (64%)
 Frame = +3

Query: 252 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 431
           GT+KL  +PRP M +C+LGD    D AK   V  M                         
Sbjct: 50  GTIKLPNVPRPNMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAF 109

Query: 432 XXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 611
             SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVG
Sbjct: 110 IASEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVG 169

Query: 612 HVDMTPDELAXNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPXKLY 752
           HV+M+ ++L  N+ L++NFLVSLLKK WQN+ SL +KSTMG P +LY
Sbjct: 170 HVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216



 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 34/52 (65%), Positives = 41/52 (78%)
 Frame = +2

Query: 107 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGHCK 262
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSG  K
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
 Frame = +3

Query: 441 ESLIKQIPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVAV 608
           + +I  +PR+LG    +  K P  +       E + +++    G   F         +  
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKC 203

Query: 609 GHVDMTPDELAXNVHLSINFLVS-LLKKHWQNVRSLHMKST 728
           GHV  T  ELA NV   + F+   ++    + + S+H+K++
Sbjct: 204 GHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +2

Query: 89   LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 253
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = +3

Query: 534  TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AXNVHLSINFLVSLLKK 689
            T++I+   GT+          V  LS+A+G+++  P  L      N H+S+  L  L+K 
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741

Query: 690  HW 695
            H+
Sbjct: 2742 HY 2743


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 634 SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 536
           S+G   ++ T T R   F  WN+++   +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 170 KKRNFLETVELQIGLKNYDPQKDKRFSGH 256
           +K+N L   E+   L  YDP++  + SGH
Sbjct: 139 EKKNCLSHHEVLTRLDGYDPERGVKVSGH 167


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 620 HDS**ACSXCASFHQLPCVTAQETLAEC 703
           H S  + S   ++HQL CV  Q+ L+EC
Sbjct: 52  HPSINSLSSFQTYHQLLCVLEQKHLSEC 79


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 554 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 447
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,708
Number of Sequences: 5004
Number of extensions: 64849
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)