Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_B03
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 169 2e-42
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 169 2e-42
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 163 1e-40
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 161 7e-40
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 49 6e-06
04_04_0401 - 24946801-24947562 43 3e-04
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 6.5
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 29 6.5
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 28 8.6
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 169 bits (412), Expect = 2e-42
Identities = 81/167 (48%), Positives = 112/167 (67%)
Frame = +3
Query: 252 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 431
G+VKL +IPRPKM+VC+LGD QH +EA+ + + M
Sbjct: 68 GSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAF 127
Query: 432 XXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 611
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG
Sbjct: 128 LASEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVG 182
Query: 612 HVDMTPDELAXNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPXKLY 752
++ M ++ N+ +S+NFLVSLLKK+WQNVR L++KSTMG P +++
Sbjct: 183 NLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 229
Score = 71.7 bits (168), Expect = 7e-13
Identities = 38/73 (52%), Positives = 49/73 (67%)
Frame = +2
Query: 44 IFCFYNLPSVVIGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNY 223
+ CF N V+ SL +++ K+ + L E ++ V+ SK+K R F ETVELQIGLKNY
Sbjct: 3 VLCFLNKIHVL---SLRDQLH-KLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNY 58
Query: 224 DPQKDKRFSGHCK 262
DPQKDKRFSG K
Sbjct: 59 DPQKDKRFSGSVK 71
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 169 bits (412), Expect = 2e-42
Identities = 81/167 (48%), Positives = 112/167 (67%)
Frame = +3
Query: 252 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 431
G+VKL +IPRPKM+VC+LGD QH +EA+ + + M
Sbjct: 50 GSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAF 109
Query: 432 XXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 611
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG
Sbjct: 110 LASEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVG 164
Query: 612 HVDMTPDELAXNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPXKLY 752
++ M ++ N+ +S+NFLVSLLKK+WQNVR L++KSTMG P +++
Sbjct: 165 NLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPYRVF 211
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/52 (61%), Positives = 38/52 (73%)
Frame = +2
Query: 107 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGHCK 262
SK+ + L E ++ V+ K+K R F ETVELQIGLKNYDPQKDKRFSG K
Sbjct: 2 SKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVK 53
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 163 bits (397), Expect = 1e-40
Identities = 80/167 (47%), Positives = 110/167 (65%)
Frame = +3
Query: 252 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 431
G+VKL +IPRPK++VC+LGD QH +EA+ + + M
Sbjct: 50 GSVKLPHIPRPKLKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAF 109
Query: 432 XXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 611
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG
Sbjct: 110 LASEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVG 164
Query: 612 HVDMTPDELAXNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPXKLY 752
+ M ++ NV +S+NFLVSLLKK+WQNVR L++KSTMG +++
Sbjct: 165 NCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVYRVF 211
Score = 72.5 bits (170), Expect = 4e-13
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +2
Query: 107 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGHCK 262
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG K
Sbjct: 2 SKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVK 53
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 161 bits (391), Expect = 7e-40
Identities = 86/189 (45%), Positives = 115/189 (60%), Gaps = 22/189 (11%)
Frame = +3
Query: 252 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 431
G+VKL +IPRPKM+VC+LGD QH +EA+ + + M
Sbjct: 50 GSVKLPHIPRPKMKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAF 109
Query: 432 XXSESLIKQIPRLLGPGLNKAGK----------------------FPGLLSHQESMTQKI 545
SE++IKQIPRLLGPGLNKAGK FP L++HQES+ K+
Sbjct: 110 LASEAIIKQIPRLLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKV 169
Query: 546 DEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXNVHLSINFLVSLLKKHWQNVRSLHMKS 725
+E K T+KFQ+KKVLC+ VAVG+ M ++ NV +S+NFLVSLLKK+WQNVR L++KS
Sbjct: 170 NETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKS 229
Query: 726 TMGPPXKLY 752
TMG +++
Sbjct: 230 TMGKVIRVF 238
Score = 72.5 bits (170), Expect = 4e-13
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +2
Query: 107 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGHCK 262
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG K
Sbjct: 2 SKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVK 53
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 48.8 bits (111), Expect = 6e-06
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = +3
Query: 444 SLIKQIPRLLGPGLNKAGKFPGLLSHQES-MTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 620
+++ +PR+LG K P + + +++ +V + ++ C + VG +D
Sbjct: 145 AVLPLLPRVLGKAFYSTKKAPVAVDFARTGWLEQVRKVMNSTFLYLRTGTCSGIKVGRLD 204
Query: 621 MTPDELAXNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPXKLY 752
M ++ NV ++ V + K W NVRSLH+K+ +Y
Sbjct: 205 MKEEDTVENVMAAVEAAVENVPKKWANVRSLHLKAVDSVALPIY 248
>04_04_0401 - 24946801-24947562
Length = 253
Score = 43.2 bits (97), Expect = 3e-04
Identities = 22/93 (23%), Positives = 43/93 (46%)
Frame = +3
Query: 474 GPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXNVH 653
G KA + + ++ + E ++ +++ C +V VGH M +E NV
Sbjct: 113 GKAAAKAARVVPVDLADQAWAESAREAARRVELRVEGGTCRAVRVGHAAMAREEAVENVV 172
Query: 654 LSINFLVSLLKKHWQNVRSLHMKSTMGPPXKLY 752
++ + + + W+NVR+LH+K+ LY
Sbjct: 173 AAVEAAAACVPRKWRNVRALHVKAPESVALPLY 205
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 585 PSSFGT*WFP*LHQSSASWTPGGREDQGIYQLCSNR 478
P F WFP +H ++ S R Q I+ +C N+
Sbjct: 493 PVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK 528
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 636 LAXNVHLSINFLVSLLKKH 692
+ VHLS+NF++ L+KKH
Sbjct: 302 IVEGVHLSLNFVMGLMKKH 320
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 248 RNACPSVGHSSSDQFEALQSPKS 180
RN PS+ H +SD F + SP S
Sbjct: 84 RNLSPSISHQASDSFSPVPSPLS 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,157,743
Number of Sequences: 37544
Number of extensions: 424390
Number of successful extensions: 1093
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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