Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_B03
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 204 9e-53
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 204 9e-53
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 185 3e-47
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 37 0.017
Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical pr... 31 1.5
AL021346-2|CAB63233.1| 419|Caenorhabditis elegans Hypothetical ... 30 1.9
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 29 4.4
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 29 4.4
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 29 4.4
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 204 bits (497), Expect = 9e-53
Identities = 96/167 (57%), Positives = 119/167 (71%)
Frame = +3
Query: 252 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 431
G+++LK+IPRP M+VCV GDQ H DEA ++P M
Sbjct: 20 GSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAF 79
Query: 432 XXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 611
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVG
Sbjct: 80 IASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVG 139
Query: 612 HVDMTPDELAXNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPXKLY 752
HV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG P ++Y
Sbjct: 140 HVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186
Score = 35.1 bits (77), Expect = 0.068
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 215 KNYDPQKDKRFSGHCKAK 268
KNYDPQKDKRFSG + K
Sbjct: 8 KNYDPQKDKRFSGSIRLK 25
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 204 bits (497), Expect = 9e-53
Identities = 96/167 (57%), Positives = 119/167 (71%)
Frame = +3
Query: 252 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 431
G+++LK+IPRP M+VCV GDQ H DEA ++P M
Sbjct: 50 GSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAF 109
Query: 432 XXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 611
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVG
Sbjct: 110 IASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVG 169
Query: 612 HVDMTPDELAXNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPXKLY 752
HV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG P ++Y
Sbjct: 170 HVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216
Score = 75.8 bits (178), Expect = 4e-14
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = +2
Query: 107 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGHCKAK 268
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG + K
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLK 55
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 185 bits (451), Expect = 3e-47
Identities = 89/155 (57%), Positives = 108/155 (69%)
Frame = +3
Query: 288 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 467
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60
Query: 468 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXN 647
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N
Sbjct: 61 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120
Query: 648 VHLSINFLVSLLKKHWQNVRSLHMKSTMGPPXKLY 752
+ LSINFLVSLLKK+WQNVRSL++KSTMG P ++Y
Sbjct: 121 ISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 37.1 bits (82), Expect = 0.017
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +3
Query: 459 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS-VAVGHVDMTPDE 635
+ LG +A K P +Q+ ++ I+ T+ + +++ + S V VGH+ + +
Sbjct: 317 VKSFLGKEFYRAHKCPLPFVYQKPISTAIENALRTVVYPLRRYMVRSCVNVGHLGQSSAD 376
Query: 636 LAXNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 740
L N+ + + S + N+RS+++ ++ G P
Sbjct: 377 LKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411
>Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical
protein R10E8.3 protein.
Length = 522
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 602 YRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSFVQTGTQQTGN 459
+R + HLEL GS L+FI LL L +K R+ T F G GN
Sbjct: 348 FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIFATVGDVNNGN 395
>AL021346-2|CAB63233.1| 419|Caenorhabditis elegans Hypothetical
protein H37A05.2 protein.
Length = 419
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = -3
Query: 386 LIQFFQSLSIHTWHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSARRNACPSVGHSSSDQ 207
L F +S TW I+ +T L+ LH R ++ + + ACP+V S +
Sbjct: 86 LYNFSTLVSSETWDIEKMKSMTSLV----KELHNREVDMYRIIMREKPACPTVNVLSLEA 141
Query: 206 FEALQSPKSYV 174
F L K+Y+
Sbjct: 142 FTELSPLKAYI 152
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 56 YNLPSVVIGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQK 235
Y++ S V G S+ + ++S +D+L E ++ + +S K K LET+ Q G K D
Sbjct: 183 YHIGSQVGGSSMEDVLTSD-EKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHS 240
Query: 236 DKR 244
+R
Sbjct: 241 RRR 243
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 480 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXNVHLS 659
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 660 INFLVSLLKKH-WQNVRSL 713
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 480 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXNVHLS 659
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 660 INFLVSLLKKH-WQNVRSL 713
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 480 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXNVHLS 659
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 660 INFLVSLLKKH-WQNVRSL 713
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,847
Number of Sequences: 27780
Number of extensions: 381894
Number of successful extensions: 940
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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