Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_A24
(970 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.75
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 28 2.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.75
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 670 GPPPXKXPXGAFSXGPPPRXXKXXPPP 750
GPPP P G GPPP PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPP---PPPPPP 783
Score = 29.5 bits (63), Expect = 0.75
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Frame = -3
Query: 968 PPXG----GXXPPPPPPPXXXXGG 909
PP G G PPPPPPP GG
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 965 PXGGXXPPPPPPPXXXXGG 909
P G PPPPPPP G
Sbjct: 756 PIMGGPPPPPPPPGVAGAG 774
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 968 PPXGGXXPPPPPP 930
P GG PPPPPP
Sbjct: 756 PIMGGPPPPPPPP 768
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 253 PXXGGXRXPPXXKXXGGGGPPXP 321
P GG PP G GPP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPP 778
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 2.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 959 GGXXPPPPPPP 927
GG PPPPPPP
Sbjct: 303 GGLPPPPPPPP 313
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 968 PPXGGXXPPPPPP 930
PP G PPPPPP
Sbjct: 354 PPQGRSAPPPPPP 366
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +1
Query: 610 GXPPXXGXPREKNXXPRXPXGPPPXKXPXGAFSXGPPPRXXKXXPPPR 753
G PP G + P P PPP G+ P R PPPR
Sbjct: 323 GKPPI-GNGSSNSSLPPPP--PPPRSNAAGSIPLPPQGRSAPPPPPPR 367
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +1
Query: 610 GXPPXXGXPREKNXXPRXPXGPPPXKXPXGAFSXGPPPRXXKXXPPPRGGXP 765
G PP P G PP P PPP P P G P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
Score = 25.8 bits (54), Expect = 9.2
Identities = 20/83 (24%), Positives = 20/83 (24%)
Frame = +1
Query: 664 PXGPPPXKXPXGAFSXGPPPRXXKXXPPPRGGXPXXXXXXXXGGXPXPXXXXXXXXXXXX 843
P PPP P P P P P G P P P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP--------SVAV 1111
Query: 844 PPXXXXXXXPPXXXPXXXXXPXP 912
PP PP P P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVP 1134
Score = 25.8 bits (54), Expect = 9.2
Identities = 23/104 (22%), Positives = 24/104 (23%), Gaps = 2/104 (1%)
Frame = +1
Query: 610 GXPPXXGXPREKNXXPRXPXGPPPXKXPXGAFSXGPPPRXXKXXPPPRGGXPXXXXXXXX 789
G PP P+ PP P GA P P P G P
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAA 1149
Query: 790 GGXPXPXXXXXXXXXXXXPP--XXXXXXXPPXXXPXXXXXPXPP 915
P P P PP P P PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.9
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -3
Query: 764 GXPPRGGGXFXXXRG-GGPXEKAPXGXFXGGGPXGXRGXXFFSRGXPXXGG 615
G PP G G F G GG GGGP G G G P G
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 968 PPXGGXXPPPPPPP 927
PP G PPPPPPP
Sbjct: 5 PP--GNPPPPPPPP 16
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,832
Number of Sequences: 5004
Number of extensions: 29744
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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