Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_A23
(935 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X93093-1|CAA63646.1| 271|Homo sapiens LW blood group protein. 32 3.4
S78852-1|AAB35046.1| 130|Homo sapiens Landsteiner-Wiener blood ... 32 3.4
L27671-1|AAA59538.1| 270|Homo sapiens Landsteiner-Wiener blood ... 32 3.4
L27670-1|AAA59537.1| 236|Homo sapiens Landsteiner-Wiener blood ... 32 3.4
DQ011692-1|AAY16986.1| 271|Homo sapiens intercellular adhesion ... 32 3.4
BT009816-1|AAP88818.1| 272|Homo sapiens intercellular adhesion ... 32 3.4
BC029364-1|AAH29364.1| 271|Homo sapiens intercellular adhesion ... 32 3.4
BC000046-1|AAH00046.1| 272|Homo sapiens intercellular adhesion ... 32 3.4
Z98051-2|CAI42861.1| 878|Homo sapiens PHD finger protein 8 prot... 31 6.0
Z98051-1|CAI42860.1| 1060|Homo sapiens PHD finger protein 8 prot... 31 6.0
BC053861-1|AAH53861.1| 1024|Homo sapiens PHD finger protein 8 pr... 31 6.0
AL732374-7|CAI41582.1| 952|Homo sapiens PHD finger protein 8 pr... 31 6.0
AL732374-6|CAI41581.1| 658|Homo sapiens PHD finger protein 8 pr... 31 6.0
AL732374-2|CAI41577.1| 878|Homo sapiens PHD finger protein 8 pr... 31 6.0
AL732374-1|CAI41576.1| 1060|Homo sapiens PHD finger protein 8 pr... 31 6.0
AL589872-1|CAH70724.1| 1060|Homo sapiens PHD finger protein 8 pr... 31 6.0
AK021696-1|BAB13877.1| 790|Homo sapiens protein ( Homo sapiens ... 31 6.0
AB029034-1|BAA83063.1| 1084|Homo sapiens KIAA1111 protein protein. 31 6.0
>X93093-1|CAA63646.1| 271|Homo sapiens LW blood group protein.
Length = 271
Score = 31.9 bits (69), Expect = 3.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 675 PFXPSGNRGPFPIXXPCRYLSPGLGRSXQLGC---CPXPVNXPXXLPVKR 815
P PSG PF + +++ G+S QL C CP P N P+++
Sbjct: 38 PLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQ 87
>S78852-1|AAB35046.1| 130|Homo sapiens Landsteiner-Wiener blood
group antigen a protein.
Length = 130
Score = 31.9 bits (69), Expect = 3.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 675 PFXPSGNRGPFPIXXPCRYLSPGLGRSXQLGC---CPXPVNXPXXLPVKR 815
P PSG PF + +++ G+S QL C CP P N P+++
Sbjct: 38 PLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQ 87
>L27671-1|AAA59538.1| 270|Homo sapiens Landsteiner-Wiener blood
group glycoprotein protein.
Length = 270
Score = 31.9 bits (69), Expect = 3.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 675 PFXPSGNRGPFPIXXPCRYLSPGLGRSXQLGC---CPXPVNXPXXLPVKR 815
P PSG PF + +++ G+S QL C CP P N P+++
Sbjct: 37 PLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQ 86
>L27670-1|AAA59537.1| 236|Homo sapiens Landsteiner-Wiener blood
group glycoprotein protein.
Length = 236
Score = 31.9 bits (69), Expect = 3.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 675 PFXPSGNRGPFPIXXPCRYLSPGLGRSXQLGC---CPXPVNXPXXLPVKR 815
P PSG PF + +++ G+S QL C CP P N P+++
Sbjct: 37 PLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQ 86
>DQ011692-1|AAY16986.1| 271|Homo sapiens intercellular adhesion
molecule 4, Landsteiner-Wiener blood group protein.
Length = 271
Score = 31.9 bits (69), Expect = 3.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 675 PFXPSGNRGPFPIXXPCRYLSPGLGRSXQLGC---CPXPVNXPXXLPVKR 815
P PSG PF + +++ G+S QL C CP P N P+++
Sbjct: 38 PLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQ 87
>BT009816-1|AAP88818.1| 272|Homo sapiens intercellular adhesion
molecule 4, Landsteiner-Wiener blood group protein.
Length = 272
Score = 31.9 bits (69), Expect = 3.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 675 PFXPSGNRGPFPIXXPCRYLSPGLGRSXQLGC---CPXPVNXPXXLPVKR 815
P PSG PF + +++ G+S QL C CP P N P+++
Sbjct: 38 PLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQ 87
>BC029364-1|AAH29364.1| 271|Homo sapiens intercellular adhesion
molecule 4 (Landsteiner-Wiener blood group) protein.
Length = 271
Score = 31.9 bits (69), Expect = 3.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 675 PFXPSGNRGPFPIXXPCRYLSPGLGRSXQLGC---CPXPVNXPXXLPVKR 815
P PSG PF + +++ G+S QL C CP P N P+++
Sbjct: 38 PLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQ 87
>BC000046-1|AAH00046.1| 272|Homo sapiens intercellular adhesion
molecule 4 (Landsteiner-Wiener blood group) protein.
Length = 272
Score = 31.9 bits (69), Expect = 3.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 675 PFXPSGNRGPFPIXXPCRYLSPGLGRSXQLGC---CPXPVNXPXXLPVKR 815
P PSG PF + +++ G+S QL C CP P N P+++
Sbjct: 38 PLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQ 87
>Z98051-2|CAI42861.1| 878|Homo sapiens PHD finger protein 8
protein.
Length = 878
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 538 DEHHKIDAQXXGAKPDRTIXIQGVSPWKLPRAXSCSDPAAYRIP 669
D+ +ID + K T+ I+ P KLPRA CSDP R P
Sbjct: 616 DDELQIDERL--GKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 657
>Z98051-1|CAI42860.1| 1060|Homo sapiens PHD finger protein 8
protein.
Length = 1060
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 538 DEHHKIDAQXXGAKPDRTIXIQGVSPWKLPRAXSCSDPAAYRIP 669
D+ +ID + K T+ I+ P KLPRA CSDP R P
Sbjct: 652 DDELQIDERL--GKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 693
>BC053861-1|AAH53861.1| 1024|Homo sapiens PHD finger protein 8
protein.
Length = 1024
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 538 DEHHKIDAQXXGAKPDRTIXIQGVSPWKLPRAXSCSDPAAYRIP 669
D+ +ID + K T+ I+ P KLPRA CSDP R P
Sbjct: 616 DDELQIDERL--GKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 657
>AL732374-7|CAI41582.1| 952|Homo sapiens PHD finger protein 8
protein.
Length = 952
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 538 DEHHKIDAQXXGAKPDRTIXIQGVSPWKLPRAXSCSDPAAYRIP 669
D+ +ID + K T+ I+ P KLPRA CSDP R P
Sbjct: 519 DDELQIDERL--GKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 560
>AL732374-6|CAI41581.1| 658|Homo sapiens PHD finger protein 8
protein.
Length = 658
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 538 DEHHKIDAQXXGAKPDRTIXIQGVSPWKLPRAXSCSDPAAYRIP 669
D+ +ID + K T+ I+ P KLPRA CSDP R P
Sbjct: 379 DDELQIDERL--GKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 420
>AL732374-2|CAI41577.1| 878|Homo sapiens PHD finger protein 8
protein.
Length = 878
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 538 DEHHKIDAQXXGAKPDRTIXIQGVSPWKLPRAXSCSDPAAYRIP 669
D+ +ID + K T+ I+ P KLPRA CSDP R P
Sbjct: 616 DDELQIDERL--GKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 657
>AL732374-1|CAI41576.1| 1060|Homo sapiens PHD finger protein 8
protein.
Length = 1060
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 538 DEHHKIDAQXXGAKPDRTIXIQGVSPWKLPRAXSCSDPAAYRIP 669
D+ +ID + K T+ I+ P KLPRA CSDP R P
Sbjct: 652 DDELQIDERL--GKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 693
>AL589872-1|CAH70724.1| 1060|Homo sapiens PHD finger protein 8
protein.
Length = 1060
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 538 DEHHKIDAQXXGAKPDRTIXIQGVSPWKLPRAXSCSDPAAYRIP 669
D+ +ID + K T+ I+ P KLPRA CSDP R P
Sbjct: 652 DDELQIDERL--GKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 693
>AK021696-1|BAB13877.1| 790|Homo sapiens protein ( Homo sapiens
cDNA FLJ11634 fis, clone HEMBA1004275, moderately
similar to Homo sapiens PHD-finger protein (GRC5) mRNA.
).
Length = 790
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 538 DEHHKIDAQXXGAKPDRTIXIQGVSPWKLPRAXSCSDPAAYRIP 669
D+ +ID + K T+ I+ P KLPRA CSDP R P
Sbjct: 515 DDELQIDERL--GKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 556
>AB029034-1|BAA83063.1| 1084|Homo sapiens KIAA1111 protein protein.
Length = 1084
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 538 DEHHKIDAQXXGAKPDRTIXIQGVSPWKLPRAXSCSDPAAYRIP 669
D+ +ID + K T+ I+ P KLPRA CSDP R P
Sbjct: 676 DDELQIDERL--GKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 717
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,434,161
Number of Sequences: 237096
Number of extensions: 2511902
Number of successful extensions: 6933
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6913
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12270013262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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