Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A23
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    34   0.17 
AC006630-5|AAK68323.1|  335|Caenorhabditis elegans Collagen prot...    31   1.2  
AY347577-1|AAP97871.1|  322|Caenorhabditis elegans COLlagen stru...    30   2.1  
AC006665-1|AAF39908.1|  322|Caenorhabditis elegans Dumpy : short...    30   2.1  
Z69383-11|CAM06588.1|  110|Caenorhabditis elegans Hypothetical p...    29   4.8  
Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical pr...    29   6.3  

>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +3

Query: 612 PLETPSCALLFRPCRLPDTCPPFXPSGNRGPFPIXXPCRYLSPGLGRSXQLGCCPXPVNX 791
           P  +PSC     P  LP   PP  P    GP P+  PC    P    +    CCP P   
Sbjct: 74  PRPSPSCCPYVPPAPLPPPPPPASPC--CGPSPVPAPCCPPPP----APAAPCCPPP-PP 126

Query: 792 PXXLPV---KRXXPPEN 833
           P   P+   K+   PEN
Sbjct: 127 PTPSPLVCCKQAPVPEN 143


>AC006630-5|AAK68323.1|  335|Caenorhabditis elegans Collagen protein
           165 protein.
          Length = 335

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
 Frame = -2

Query: 850 GXQGKXFSGGXXRFTGKXXGXLTGXGQQPSWXERPXPGLRYLQGXXMGKGPRXPEGXXG- 674
           G  GK  + G     GK  G     G Q        PG + L G    KGP  P G  G 
Sbjct: 158 GHDGKDGNAGSDAHNGKDGGVAPSDGLQSEPCMICPPGPQGLMGQAGKKGPTGPRGSPGL 217

Query: 673 GQVSGKR 653
             + G+R
Sbjct: 218 AGIDGRR 224


>AY347577-1|AAP97871.1|  322|Caenorhabditis elegans COLlagen
           structural gene, probablya critical component of the
           embryonically derived outerlayer of the L1 cuticle (31.8
           kD) (col-59) protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
 Frame = -2

Query: 850 GXQGKXFSGGXXRFTGKXXGXLTGXGQQPSWXERPXPGLRYLQGXXMGKGPRXPEGXXG- 674
           G  G   S G     GK  G     G Q        PG + L G    KGP+ P G  G 
Sbjct: 145 GKDGNDGSAGNDAKNGKDGGVGPSDGLQSEPCMICPPGAQGLGGAPGAKGPQGPRGSPGL 204

Query: 673 GQVSGKR 653
             V G+R
Sbjct: 205 SGVDGRR 211


>AC006665-1|AAF39908.1|  322|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 14 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
 Frame = -2

Query: 850 GXQGKXFSGGXXRFTGKXXGXLTGXGQQPSWXERPXPGLRYLQGXXMGKGPRXPEGXXG- 674
           G  G   S G     GK  G     G Q        PG + L G    KGP+ P G  G 
Sbjct: 145 GKDGNDGSAGNDAKNGKDGGVGPSDGLQSEPCMICPPGAQGLGGAPGAKGPQGPRGSPGL 204

Query: 673 GQVSGKR 653
             V G+R
Sbjct: 205 SGVDGRR 211


>Z69383-11|CAM06588.1|  110|Caenorhabditis elegans Hypothetical
           protein F13E9.15 protein.
          Length = 110

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -2

Query: 805 GKXXGXLTGXGQQPSWXERPXPGLRYLQGXXMGKGPRXPEGXXGGQVSGKRQGRN 641
           G+  G   G GQQP   +    G+   QG   G+G     G  GG   G  QG N
Sbjct: 54  GQQTGSGPGAGQQPGQGQGGNGGMGGQQGGQPGQG----NGGMGGGQQGGNQGNN 104


>Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC434.3 protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 675 GDRYPVSGRVGTGXRTREFPGGNALYXYSPVGFR 574
           G R+P+SG V  G     +  GNA    SP  FR
Sbjct: 395 GVRFPLSGAVEQGTSPYAYAHGNAFNPVSPFDFR 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,472,445
Number of Sequences: 27780
Number of extensions: 354326
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)