Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_A18
(1042 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.002
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.003
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 29 1.4
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 28 2.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 3.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.3
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 4.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 23 8.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +2
Query: 812 PPPPPPXXXXXXXXGGXGGGXPP-PXGGGXXXPPPPPGXRXKXXPP 946
PPPPPP PP P GG PPPPPG PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 35.1 bits (77), Expect = 0.016
Identities = 25/70 (35%), Positives = 25/70 (35%)
Frame = +2
Query: 710 KXPPPPPPXXXXKPXGGXGXKKKKXXXFFXXXXXPPPPPPXXXXXXXXGGXGGGXPPPXG 889
K PPPPPP P PPPPPP G G G PPP
Sbjct: 730 KSPPPPPPAVIV-PTPAPAPIPVPPPAPIMGGPPPPPPPP--------GVAGAGPPPP-- 778
Query: 890 GGXXXPPPPP 919
PPPPP
Sbjct: 779 -----PPPPP 783
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 474 PPHPFLXTPWAPPRVXFXXPXPXGGFPPPP 563
PP + TP AP + P P G PPPP
Sbjct: 736 PPAVIVPTP-APAPIPVPPPAPIMGGPPPP 764
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = -3
Query: 956 PPPXXXXXXXXXXXXXXXXXXPPPXGGGXPPPXPP 852
PPP P P GG PPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.5 bits (83), Expect = 0.003
Identities = 26/73 (35%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Frame = +2
Query: 710 KXPPPPPPXXXX---KPXGGXGXKKKKXXXFFXXXXXPPPPPPXXXXXXXXGGXGGGXPP 880
K PPPPPP KP G G PPPPPP G P
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLP--------PPPPPPR-------SNAAGSIPL 353
Query: 881 PXGGGXXXPPPPP 919
P G PPPPP
Sbjct: 354 PPQGRSAPPPPPP 366
Score = 32.7 bits (71), Expect = 0.088
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 906 PPPPPGXXKKXPPPXGGXXPXFFFXPPPP 992
PPPPP + PP G PPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 27.5 bits (58), Expect = 3.3
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Frame = +2
Query: 716 PPPPPPXXXXKPXGGXGXKKKKXXXFFXXXXXPPPPPPXXXXXXXXGGXGGGX------- 874
PP PPP KK+ PPPPPP G G
Sbjct: 290 PPLPPPSSRVSAAALAANKKR-----------PPPPPPPSRRNRGKPPIGNGSSNSSLPP 338
Query: 875 --PPPXGGGXXXPPPPPGXRXKXXPP 946
PPP P PP R PP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPP 364
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 96 LXVNXAPLGNLFKELIKNLTFWEPKTYEN 182
L + PL N KELI L F PK ++N
Sbjct: 568 LLITGTPLQNNLKELISLLAFMLPKVFDN 596
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = +3
Query: 906 PPPPPGXXKKXPPP---XGGXXPXFF 974
PPP P ++ PPP GG P FF
Sbjct: 33 PPPAPSRVQQAPPPTAVQGGSSPGFF 58
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.4 bits (48), Expect(2) = 3.1
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +2
Query: 716 PPPPPPXXXXKPXGG 760
PPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Score = 22.2 bits (45), Expect(2) = 3.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 704 FXKXPPPPPP 733
F PPPPPP
Sbjct: 944 FPPPPPPPPP 953
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 915 PPGXXKKXPPPXGGXXPXFFFXPPPP 992
PPG PPP G P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 23.8 bits (49), Expect(2) = 4.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 906 PPPPPGXXKK 935
PPPPPG KK
Sbjct: 26 PPPPPGYVKK 35
Score = 21.0 bits (42), Expect(2) = 4.9
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 810 PPPPPP 827
PPPPPP
Sbjct: 9 PPPPPP 14
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 257 GLVPGKWXXKIXGVXPKP--GLNLRGPFY 337
G +P +W + + PKP G++ PFY
Sbjct: 290 GSIPLRWSQEFSNITPKPPIGIDFHDPFY 318
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Frame = +2
Query: 812 PPPP---PPXXXXXXXXGGXGGGXPPPXGGGXXXPPPPPGXR 928
PPPP PP G PPP P PG R
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 7.6
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Frame = -2
Query: 882 GGGXPPPXPPXXXXXXXXGGGG---GGXXXXKKXXXXFFFXXPXPPXGFXXXXGGGGGG 715
G G PPP P GG G GG F P GF GG GGG
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF----EGGPGGFGGGPGGFGGG 250
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 23.0 bits (47), Expect(2) = 8.3
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 906 PPPPPGXXKKXPPPXGGXXPXFFFXPPPPXXG 1001
PPPPP K PP P P P G
Sbjct: 1883 PPPPPMALPKAGPPSAA--PTSALPPAGPPAG 1912
Score = 21.0 bits (42), Expect(2) = 8.3
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 810 PPPPPP 827
PPPPPP
Sbjct: 1882 PPPPPP 1887
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,916
Number of Sequences: 5004
Number of extensions: 52711
Number of successful extensions: 332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 545231778
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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