Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A17
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.40 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    22   5.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 290 PQXPPXXGGPPXFFFPXXPPPXXXGGGGXPP 382
           P   P  GGPP    P  PPP   G G  PP
Sbjct: 752 PPPAPIMGGPP----PPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/69 (27%), Positives = 20/69 (28%)
 Frame = +2

Query: 281 KGAPQXPPXXGGPPXFFFPXXPPPXXXGGGGXPPXXXXXXFFFFXXXKKXPXPPPXXXXX 460
           K  P  PP    P     P   PP     GG PP                P PPP     
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG---VAGAGPPPPPPPPPAVS 786

Query: 461 GGGXXFXXP 487
            GG  +  P
Sbjct: 787 AGGSRYYAP 795


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.2 bits (45), Expect(2) = 5.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 618 FXXPXPPPPP 589
           F  P PPPPP
Sbjct: 944 FPPPPPPPPP 953



 Score = 21.8 bits (44), Expect(2) = 5.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 609 PXPPPPPXFFXXXXGG 562
           P PPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,171
Number of Sequences: 5004
Number of extensions: 33676
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)