Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A11
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   3.7  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   4.9  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       26   6.5  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 591  IDLLKLSF*HLYHTSKSRLSIKFKILLKLTYQNRLHKKIIVIVFWNSNFVLLA 433
            +  L LSF  L+ T  SRL   +K+LL+      ++   +V   W  +FVLL+
Sbjct: 1077 VQQLWLSFLWLWGTLSSRLDYNYKVLLQ-----PINSVYVVAGVWPVSFVLLS 1124


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 272 FH*LLRVHGQTV*LINGGRFLVTHRVPMSAVSSTPVVVIP 153
           F  L+R   Q V +I  G F   HR  M+A S TPV + P
Sbjct: 42  FRLLMRRFAQPVVIITSG-FADGHRAGMTASSFTPVSLTP 80


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 222 TVYELDSLAVHTEELMEKYTPKSN 293
           TVYE+D  ++ T EL E YT   N
Sbjct: 32  TVYEMDVQSLLTGELEESYTKADN 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,714
Number of Sequences: 5004
Number of extensions: 56748
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)