Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A11
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.73 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.73 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.8  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   8.9  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   8.9  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   8.9  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   8.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   8.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 383 GLMNSLPPSGDQEANVSASRTK 448
           GL+N+LPPS  +E      +TK
Sbjct: 524 GLLNALPPSSMKETEEEKKKTK 545


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -2

Query: 212 LVTHRVPMSAVSSTPVVVIPREPDASSLSGITDRLLLRAWRNSPCRIRFKTEHQNLKXFH 33
           L TH      V+ + +++    PD SSL    + LL + W +   R   +++++ L   H
Sbjct: 129 LRTHLRGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIH 188

Query: 32  YSEXV 18
           + + +
Sbjct: 189 HYDDI 193


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 146 PDASSLSGITDRLLLRAWRNSPCRIRFKTEHQNLKXFHYSEXV 18
           PD SSL    + LL + W +   R   +++++ L   H+ + +
Sbjct: 100 PDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDI 142


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 146 PDASSLSGITDRLLLRAWRNSPCRIRFKTEHQNLKXFHYSEXV 18
           PD SSL    + LL + W +   R   +++++ L   H+ + +
Sbjct: 100 PDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDI 142


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 146 PDASSLSGITDRLLLRAWRNSPCRIRFKTEHQNLKXFHYSEXV 18
           PD SSL    + LL + W +   R   +++++ L   H+ + +
Sbjct: 100 PDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDI 142


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 280 HRNRIKITLSQWISYVFSY 336
           HRN     +S+W+  VF Y
Sbjct: 320 HRNADTHEMSEWVKVVFLY 338


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 6/26 (23%), Positives = 17/26 (65%)
 Frame = -1

Query: 507 LTYQNRLHKKIIVIVFWNSNFVLLAD 430
           L +++  H  + ++++W+   ++LAD
Sbjct: 158 LIFESWTHNVLDMVLYWDQEPIILAD 183


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 102 QEQPVRNARQAGSVRFTRNHHNWGARYGRHRDAMRDKEPTTVYELDSLAVHTEELMEKYT 281
           +E+  ++ +   S R  R      +R  + R+  R KEP  +  L +  +H      K  
Sbjct: 43  REREKKSYKNENSYRKYRETSKERSRDRKERE--RSKEPKIISSLSNKTIHNNNNNYKKL 100

Query: 282 PKSNKNY 302
              N NY
Sbjct: 101 QYYNINY 107


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 102 QEQPVRNARQAGSVRFTRNHHNWGARYGRHRDAMRDKEPTTVYELDSLAVHTEELMEKYT 281
           +E+  ++ +   S R  R      +R  + R+  R KEP  +  L +  +H      K  
Sbjct: 43  REREKKSYKNENSYRKYRETSKERSRDRKERE--RSKEPKIISSLSNKTIHNNNNNYKKL 100

Query: 282 PKSNKNY 302
              N NY
Sbjct: 101 QYYNINY 107


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 102 QEQPVRNARQAGSVRFTRNHHNWGARYGRHRDAMRDKEPTTVYELDSLAVHTEELMEKYT 281
           +E+  ++ +   S R  R      +R  + R+  R KEP  +  L +  +H      K  
Sbjct: 43  REREKKSYKNENSYRKYRETSKERSRDRKERE--RSKEPKIISSLSNKTIHNNNNNYKKL 100

Query: 282 PKSNKNY 302
              N NY
Sbjct: 101 QYYNINY 107


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 102 QEQPVRNARQAGSVRFTRNHHNWGARYGRHRDAMRDKEPTTVYELDSLAVHTEELMEKYT 281
           +E+  ++ +   S R  R      +R  + R+  R KEP  +  L +  +H      K  
Sbjct: 43  REREKKSYKNENSYRKYRETSKERSRDRKERE--RSKEPKIISSLSNKTIHNNNNNYKKL 100

Query: 282 PKSNKNY 302
              N NY
Sbjct: 101 QYYNINY 107


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 102 QEQPVRNARQAGSVRFTRNHHNWGARYGRHRDAMRDKEPTTVYELDSLAVHTEELMEKYT 281
           +E+  ++ +   S R  R      +R  + R+  R KEP  +  L +  +H      K  
Sbjct: 276 REREKKSYKNENSYRKYRETSKERSRDRKERE--RSKEPKIISSLSNKTIHNNNNNYKKL 333

Query: 282 PKSNKNY 302
              N NY
Sbjct: 334 QYYNINY 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,734
Number of Sequences: 438
Number of extensions: 4065
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)