Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_A09
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.39
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo... 30 0.39
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 28 1.6
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 28 2.1
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.1
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|... 27 4.9
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 6.4
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 8.5
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.3 bits (65), Expect = 0.39
Identities = 30/116 (25%), Positives = 51/116 (43%)
Frame = +3
Query: 315 LKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNNIIGLVASTLTK 494
L + S+F QSE+ + Q +K + + + + V K ++ AS +
Sbjct: 189 LTNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSL 248
Query: 495 LYETKNFDILTEAFKILYKSNTTNPALLETEKLSPIAESRACNEKLREDSLNEIES 662
E + + K+L SN T L +TE S AE + EKL + ++NE +S
Sbjct: 249 RGEQERLE------KLLVSSNKTVSTLRQTEN-SLRAECKTLQEKLEKCAINEEDS 297
Score = 26.6 bits (56), Expect = 4.9
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +3
Query: 270 KIQALDSVLQQSFHYLKGIVSDFEVLQ---SES----ENYKTQFEIQKQKCESESCPSAE 428
KI++++S L L V LQ SES EN K+Q + K+K + + E
Sbjct: 1461 KIESINSSLDDKSFELASAVEKLGALQKLHSESLSLMENIKSQLQEAKEKIQVDESTIQE 1520
Query: 429 ALKKVIDTKNNIIG 470
++ +KNN G
Sbjct: 1521 LDHEITASKNNYEG 1534
>SPCC4B3.18 |||phosphopantothenate-cysteine
ligase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 316
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 276 QALDSVLQQSFHYLKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDT 452
+ L + ++ YL VSDF + E +K Q K E + P + L+ ++DT
Sbjct: 164 ERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSNKLEVKMHPVPKFLRFLVDT 222
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 657 ESTPTGRISPIIQSKKAKCSLKLDCRDKKKCSENWSTPEKKVVKLS 794
ES+P ++ +SKKAK S + K E STP+K K S
Sbjct: 521 ESSPETPLTKASKSKKAKASKLANDTSKNANGETKSTPKKSKKKTS 566
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 564 NPALLETEKLSPIAESRACNEKLREDSLNEIESTPTGRISPIIQSKKAKCSLK--LDCRD 737
+P LLE + L+P+ + + N+K+ E S ++++T T + +++A S +D
Sbjct: 54 DPHLLEEDDLNPVEDYDSKNQKVVEASKLDLDATSTVWAESLSINREASISQSGIVDNEM 113
Query: 738 KKKCSE 755
+KK E
Sbjct: 114 EKKVEE 119
>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 113
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 87 RYASTVESPNSGYQNLKD 34
RYASTV SP SG N D
Sbjct: 21 RYASTVPSPRSGISNTND 38
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 315 LKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNNIIGLV 476
LKG ++++ +++Y +FE QK+K S S + ++ + K IIG +
Sbjct: 152 LKGQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAI 205
>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 187
Score = 26.6 bits (56), Expect = 4.9
Identities = 21/85 (24%), Positives = 40/85 (47%)
Frame = +3
Query: 543 LYKSNTTNPALLETEKLSPIAESRACNEKLREDSLNEIESTPTGRISPIIQSKKAKCSLK 722
+ K N + + ++ P++ N+++ + S + I S R+ K+ C LK
Sbjct: 13 IQKQNRRHNTVDNKQEKLPLSIEIFLNKQINKISFDTIRSKQNCRL------KEIYCRLK 66
Query: 723 LDCRDKKKCSENWSTPEKKVVKLSF 797
+ CR KKK ++ S KK++ F
Sbjct: 67 IRCRLKKKFIKSLS---KKIISYHF 88
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 796 NDSLTTFFSGVDQFSEHFFLSLQSSFKEHLAFLDCIMGLI 677
NDS +T +S + + F SL +S+K+H+ + I ++
Sbjct: 104 NDSYSTSWSRSLEAAHRFLSSLVNSWKDHIVSMQMISSVL 143
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 796 NDSLTTFFSGVDQFSEHFFLSLQSSFKEHLA 704
NDS TT++ D+ + F L+ + HLA
Sbjct: 423 NDSNTTYYKNADRLEKFFQKKLRETEYSHLA 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,365
Number of Sequences: 5004
Number of extensions: 55205
Number of successful extensions: 211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -