Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A09
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    33   0.41 
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804...    32   0.72 
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    31   1.3  
02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87...    30   2.9  
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808...    29   6.7  

>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
 Frame = +3

Query: 387 QKQKCESESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAFKILYKSNTTN 566
           +K+    +  P A  L   + T  + +GL  ST+   + T   D  T    IL  SN   
Sbjct: 402 EKKSATWDQLPVATDLSNFVTTLQSTVGLKDSTVPVNFTTSKQDPNTTIGTILTGSNLAV 461

Query: 567 PALLETEKLSPIAESRACN--EKLREDSL-NEIESTPTGRISPIIQSKKAKCSLKLDCRD 737
            ++  T+   P+      N      ED L   +        +  IQ  K  C   +  +D
Sbjct: 462 DSVQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKD 521

Query: 738 KKKCSENWSTPEKKVVKLSF 797
           K++    + TPE     LSF
Sbjct: 522 KRQAFVEFLTPEDATAALSF 541


>01_06_1078 +
           34378985-34380064,34380155-34380283,34380362-34380430,
           34380536-34380588,34381309-34381421,34381565-34382132,
           34382520-34382580,34382624-34382665
          Length = 704

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 606 LLLDSISQFQAMLDWLYWICIVF*MLL*VCQSFLFHIVLLMLMQLIR 466
           LL D+IS  Q    WLYW+C     +    + FL H+    L QL R
Sbjct: 82  LLSDAISFIQDTKSWLYWVCPNCERMFLDSEGFLLHLENEHLPQLPR 128


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/107 (19%), Positives = 50/107 (46%)
 Frame = +3

Query: 336  FEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNF 515
            ++V     ++ +T  E+++  C+ E+    +  +  I +K  +I   A+   K  E ++F
Sbjct: 2574 YDVEMDVQKSLETDEELKRNTCDLEAPVYQDNAQDEISSK--LISAKAADPIKKMEARDF 2631

Query: 516  DILTEAFKILYKSNTTNPALLETEKLSPIAESRACNEKLREDSLNEI 656
            ++  E+F  + + N      +E   L+   +     +  +ED+L E+
Sbjct: 2632 ELDEESFDTVCQENVEAATEIEDGSLNRDQDDITSPKASQEDALEEV 2678


>02_01_0119 -
           876317-876610,876937-877099,877222-877302,877508-877570,
           878246-878355
          Length = 236

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 585 EKLSPIAESRACNEKLREDSLNEIESTPTGRISPIIQSKKAKCSLKLD 728
           E  S   +S+AC EK+R D LN+     +  I+P  Q+K  K ++  D
Sbjct: 62  ESSSSGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSD 109


>10_08_0814 -
           20779400-20779487,20779780-20780030,20780528-20780812,
           20781563-20782008,20782095-20782485
          Length = 486

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 333 DFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKN-NIIGLVASTLTKL 497
           +F+VL+   E   + F++     E  + P  E L K + T+N + +  + S LT+L
Sbjct: 218 EFQVLELALETVCSSFDVNVSGLERRATPVLEELTKNVSTRNLDRVRTLKSDLTRL 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,586,485
Number of Sequences: 37544
Number of extensions: 292337
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)