Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A09
         (910 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98050-1|CAI21070.1| 2717|Homo sapiens human immunodeficiency vi...    32   3.3  
X51435-1|CAA35798.1| 2717|Homo sapiens protein ( Human PRDII-BF1...    32   3.3  
AL391828-1|CAH73909.1| 2717|Homo sapiens human immunodeficiency ...    32   3.3  
AL157373-1|CAH73982.1| 2717|Homo sapiens human immunodeficiency ...    32   3.3  
AL137221-1|CAI14768.1| 2717|Homo sapiens human immunodeficiency ...    32   3.3  

>Z98050-1|CAI21070.1| 2717|Homo sapiens human immunodeficiency virus
           type I enhancer binding protein 1 protein.
          Length = 2717

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 408 ESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAF--KILYKSNTTNPALLE 581
           E C S+    K     +  I     T +  Y    FD+L +A   ++   S   +P  ++
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGTTSPSYTNTAFDVLLKAMEPELSTLSQKGSPCAIK 220

Query: 582 TEKLSPIAESRACNEKLREDSLNEIEST 665
           TEKL P   +R+   KL+  S++    T
Sbjct: 221 TEKLRPNKTARS-PPKLKNSSMDAPNQT 247


>X51435-1|CAA35798.1| 2717|Homo sapiens protein ( Human PRDII-BF1
           gene for a DNA-binding protein. ).
          Length = 2717

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 408 ESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAF--KILYKSNTTNPALLE 581
           E C S+    K     +  I     T +  Y    FD+L +A   ++   S   +P  ++
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGTTSPSYTNTAFDVLLKAMEPELSTLSQKGSPCAIK 220

Query: 582 TEKLSPIAESRACNEKLREDSLNEIEST 665
           TEKL P   +R+   KL+  S++    T
Sbjct: 221 TEKLRPNKTARS-PPKLKNSSMDAPNQT 247


>AL391828-1|CAH73909.1| 2717|Homo sapiens human immunodeficiency
           virus type I enhancer binding protein 1 protein.
          Length = 2717

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 408 ESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAF--KILYKSNTTNPALLE 581
           E C S+    K     +  I     T +  Y    FD+L +A   ++   S   +P  ++
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGTTSPSYTNTAFDVLLKAMEPELSTLSQKGSPCAIK 220

Query: 582 TEKLSPIAESRACNEKLREDSLNEIEST 665
           TEKL P   +R+   KL+  S++    T
Sbjct: 221 TEKLRPNKTARS-PPKLKNSSMDAPNQT 247


>AL157373-1|CAH73982.1| 2717|Homo sapiens human immunodeficiency
           virus type I enhancer binding protein 1 protein.
          Length = 2717

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 408 ESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAF--KILYKSNTTNPALLE 581
           E C S+    K     +  I     T +  Y    FD+L +A   ++   S   +P  ++
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGTTSPSYTNTAFDVLLKAMEPELSTLSQKGSPCAIK 220

Query: 582 TEKLSPIAESRACNEKLREDSLNEIEST 665
           TEKL P   +R+   KL+  S++    T
Sbjct: 221 TEKLRPNKTARS-PPKLKNSSMDAPNQT 247


>AL137221-1|CAI14768.1| 2717|Homo sapiens human immunodeficiency
           virus type I enhancer binding protein 1 protein.
          Length = 2717

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 408 ESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAF--KILYKSNTTNPALLE 581
           E C S+    K     +  I     T +  Y    FD+L +A   ++   S   +P  ++
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGTTSPSYTNTAFDVLLKAMEPELSTLSQKGSPCAIK 220

Query: 582 TEKLSPIAESRACNEKLREDSLNEIEST 665
           TEKL P   +R+   KL+  S++    T
Sbjct: 221 TEKLRPNKTARS-PPKLKNSSMDAPNQT 247


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,746,369
Number of Sequences: 237096
Number of extensions: 1817623
Number of successful extensions: 4189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4188
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)