Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A09
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    28   0.13 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   5.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = -2

Query: 567  DWLYWICIVF*MLL*VCQSF--LFHIVLLMLMQLIR*YCFLYLLLFSMLQH*DRIHFHTF 394
            DW +W    F  L+ V   F  +     L+L+ L       Y +  S   H  +IH    
Sbjct: 861  DWRHW---KFPNLVEVLDEFPSVRPFAPLLLLHLTPLQPRFYSISSSPDVHQGQIHLTVA 917

Query: 393  VFEFQTEFCNSPIHFGVLQNLTQYP*DNE 307
            V +++T+    PIH+GV  N  +   D E
Sbjct: 918  VVQYKTQDGFGPIHYGVCSNYLREISDGE 946


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 751 EHFFLSLQSSFKEHLAFLDCIMGLIL 674
           E +  +  + F   LAF DC++GL++
Sbjct: 73  ERYLHTATNYFVTSLAFADCLVGLVV 98


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 627 KLREDSLNEIESTPTGRISPIIQSKKAKCSLKLDC 731
           K+  D L  I  TP  +++ I +S   KC +   C
Sbjct: 34  KIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKC 68


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 534 FKILYKSNTTNPALLETEKLSPIAESRACNEKLREDSLNEI 656
           +K LYK       +++TEK S +  S      L+  ++ ++
Sbjct: 82  YKALYKGEQVAAKIIQTEKYSNMLNSEKHASFLKHSNIVKV 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,057
Number of Sequences: 438
Number of extensions: 3556
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)