Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A07
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    56   5e-09
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.71 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    29   1.2  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    27   3.8  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   6.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   8.7  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   8.7  

>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 31/102 (30%), Positives = 52/102 (50%)
 Frame = +1

Query: 82  INNCIIVNIYRLKMSFNILLKTSERGIFLKELVRNASKKTGGSTQNTNCKVKPKHRGWKV 261
           IN  + + +   ++    L       I     +R ++K  GGS++NT      +  G K 
Sbjct: 2   INQGLFIRVNNFQLLKASLAYKKASNILTFPPIRTSTKHGGGSSKNTGDSAG-RRLGIKR 60

Query: 262 QDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEAGKV 387
            +  FV+AG +L  QR T+FHPG N G G + T++++ +G V
Sbjct: 61  SENQFVRAGEILIRQRGTKFHPGDNTGLGKDHTIYSLVSGYV 102


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
 Frame = +1

Query: 100 VNIYRLK-MSFNILLK---TSERGIFLKELVRNASKKTGGSTQNTNCK--------VKPK 243
           V  Y L  +S+N+ ++    ++   F KE + N S    G     N +        VK K
Sbjct: 433 VTYYNLNTLSWNLYIEYGHPTQNSTFYKEFISNISMSDDGRIYFMNTRDIKVRSLVVKLK 492

Query: 244 HRGWKVQDG---HFVQ-AGHMLATQRT--TRFHPGLNVGFGVNGTLFAMEAGKVVVTCEK 405
           H+ W +  G   H  +   H +   +   T F PGL   + V      +  G        
Sbjct: 493 HKYWHLSSGFHLHITRFEAHDMGKVKDIDTDFEPGLQC-YQVGSDTSVLRYG-----LSF 546

Query: 406 FDPNWDHTWVQRMYKGRYDQTIYK 477
           +DP WD+      +K ++    YK
Sbjct: 547 WDPKWDYLLADNQHKQQWQAPSYK 570


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 411 IKLFTCDNYF-SSLHCKQSTINTKTNIQSWMKPSGSLRS 298
           + LF   + F SS+  K  +I TKT I SW K  G+  S
Sbjct: 649 LHLFQAQSDFESSVELKDRSIVTKTTIMSWSKYQGTKES 687


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/83 (21%), Positives = 35/83 (42%)
 Frame = +1

Query: 118 KMSFNILLKTSERGIFLKELVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHML 297
           K++ N ++ +     F +EL+  +  K   + +     +    R WK      ++A   +
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQR-WKNSPESVLKARSEI 246

Query: 298 ATQRTTRFHPGLNVGFGVNGTLF 366
              + + FHP L  G   NG +F
Sbjct: 247 TVCKPSPFHPQLIAGGAYNGQVF 269


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 52  NLKDSINHKYINNCIIVNIYRLKMSFNILLKTSERGIFLKELVRN 186
           +++ + NH  +  C +  + R   SF I L  S+   F+KE +RN
Sbjct: 506 DVEKAFNHLQV--CNLPELLRTSNSFGIWLFNSDPMRFMKEAIRN 548


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
 Frame = -3

Query: 498 WYNIVIFFIDG---LVIAPFVHPLDPSVIP-----VWIKLFTCDNY-FSSLH 370
           W+    FF        IA F+HP D +V+P      +  LF+  ++ F+SLH
Sbjct: 77  WFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLH 128


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 116 NRYMFTIMQLFMYLWFIESFKFFSNLKDS 30
           NR++  ++     L+FI S+ FFS L DS
Sbjct: 293 NRHLAYVIVAGFCLYFILSYMFFSKLLDS 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,124
Number of Sequences: 5004
Number of extensions: 61606
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)