Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A07
         (929 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0356 + 14847677-14847755,14847850-14847971,14848197-14848433     60   3e-09
08_02_0609 + 19302665-19302743,19302857-19302978,19303205-19303441     59   6e-09
08_02_0608 + 19297510-19297588,19297702-19297823,19298050-19298286     59   6e-09
01_07_0012 + 40446271-40446609,40447378-40447479,40447565-40447741     37   0.026
11_01_0534 + 4227838-4228001,4229034-4229151,4229593-4229752,422...    29   7.0  

>04_03_0356 + 14847677-14847755,14847850-14847971,14848197-14848433
          Length = 145

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
 Frame = +1

Query: 103 NIYRLKMSFNILLKTSERGIFLKELVRN-ASKKTGGSTQNTNCKVKPKHRGWKVQDGHFV 279
           N+  L  + ++   T E    L  + +  A+KKT GST+N      PK+ G K   G  V
Sbjct: 11  NVKELISNVSVYTSTVESSGGLSLIFKRWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKV 69

Query: 280 QAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEAGKV 387
           + G+++  QR TRFHPG  VG G + TLF ++ G V
Sbjct: 70  EPGNIIVRQRGTRFHPGNYVGMGKDHTLFCLKEGHV 105


>08_02_0609 + 19302665-19302743,19302857-19302978,19303205-19303441
          Length = 145

 Score = 58.8 bits (136), Expect = 6e-09
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = +1

Query: 181 RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 360
           R A+KKT GST+N      PK+ G K   G  V+ G+++  QR TRFHPG  VG G + T
Sbjct: 38  RWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHT 96

Query: 361 LFAMEAGKV 387
           LF ++ G V
Sbjct: 97  LFCLKEGHV 105


>08_02_0608 + 19297510-19297588,19297702-19297823,19298050-19298286
          Length = 145

 Score = 58.8 bits (136), Expect = 6e-09
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = +1

Query: 181 RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 360
           R A+KKT GST+N      PK+ G K   G  V+ G+++  QR TRFHPG  VG G + T
Sbjct: 38  RWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHT 96

Query: 361 LFAMEAGKV 387
           LF ++ G V
Sbjct: 97  LFCLKEGHV 105


>01_07_0012 + 40446271-40446609,40447378-40447479,40447565-40447741
          Length = 205

 Score = 36.7 bits (81), Expect = 0.026
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
 Frame = +1

Query: 178 VRNASKKTGGSTQNTNCKVKPKHR-GWKVQDGHFVQAGHMLATQRTTRF----------H 324
           ++ A KK  GST+N   +  P  R G K+      + G ++  QR TR           +
Sbjct: 58  IQMAHKKGAGSTKNG--RDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVITILFLYLLVY 115

Query: 325 PGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYKGRYDQTIY----KKYYNV 492
           PG NVG G + TLF++  G  +V  EK+ P+     V    K   +   Y    ++Y+ +
Sbjct: 116 PGNNVGMGKDHTLFSLIDG--LVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRM 173

Query: 493 IPEPQHQRFKLIDEV*IVL 549
             E +  R + I EV +VL
Sbjct: 174 QRERKKARAEGIVEVQLVL 192


>11_01_0534 +
           4227838-4228001,4229034-4229151,4229593-4229752,
           4229901-4230027,4230899-4231037,4231119-4231301,
           4231395-4231464,4231550-4231662
          Length = 357

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 413 GSNFSHVTTTFPASIANKVPLTPKPTFNPG*NRVVLCVANICPA 282
           GS+ + +    P    NKVP    P + P  N++V C  +IC A
Sbjct: 77  GSDLTWLQCDAPCQSCNKVP---HPLYRPTKNKLVPCANSICTA 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,008,994
Number of Sequences: 37544
Number of extensions: 385902
Number of successful extensions: 910
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)