Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A07
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78092-1|AAB36684.1|  297|Caenorhabditis elegans LIN-7 protein.        37   0.024
AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical...    37   0.024
AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical...    37   0.024
AF067949-10|AAC19239.4|  304|Caenorhabditis elegans Seven tm rec...    28   8.3  
AF067949-9|AAX22283.1|  323|Caenorhabditis elegans Seven tm rece...    28   8.3  

>U78092-1|AAB36684.1|  297|Caenorhabditis elegans LIN-7 protein.
          Length = 297

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +1

Query: 247 RGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEA---GKVVVTCEKFDPN 417
           RG   +DG  V+   +L  Q    +HPGLNV +  +     + A   G V ++ EK DP+
Sbjct: 26  RGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVRISQEKCDPD 85

Query: 418 WDHTWVQRMYKGRYDQTIYKKYYNV 492
           ++     + Y+ R D  +YK  +N+
Sbjct: 86  YE-IEEMKGYEYRKDVDLYKMTFNM 109


>AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10b protein.
          Length = 316

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +1

Query: 247 RGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEA---GKVVVTCEKFDPN 417
           RG   +DG  V+   +L  Q    +HPGLNV +  +     + A   G V ++ EK DP+
Sbjct: 26  RGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVRISQEKCDPD 85

Query: 418 WDHTWVQRMYKGRYDQTIYKKYYNV 492
           ++     + Y+ R D  +YK  +N+
Sbjct: 86  YE-IEEMKGYEYRKDVDLYKMTFNM 109


>AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10a protein.
          Length = 317

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +1

Query: 247 RGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEA---GKVVVTCEKFDPN 417
           RG   +DG  V+   +L  Q    +HPGLNV +  +     + A   G V ++ EK DP+
Sbjct: 26  RGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVRISQEKCDPD 85

Query: 418 WDHTWVQRMYKGRYDQTIYKKYYNV 492
           ++     + Y+ R D  +YK  +N+
Sbjct: 86  YE-IEEMKGYEYRKDVDLYKMTFNM 109


>AF067949-10|AAC19239.4|  304|Caenorhabditis elegans Seven tm
           receptor protein 180,isoform a protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 531 INKFKSLMLGLWYNIVIFFIDGLVIAPFVH 442
           I +++ LML + +  +I+ I G V+ PFVH
Sbjct: 21  IGRYRYLMLYISFFEIIYCIAGKVVRPFVH 50


>AF067949-9|AAX22283.1|  323|Caenorhabditis elegans Seven tm
           receptor protein 180,isoform b protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 531 INKFKSLMLGLWYNIVIFFIDGLVIAPFVH 442
           I +++ LML + +  +I+ I G V+ PFVH
Sbjct: 40  IGRYRYLMLYISFFEIIYCIAGKVVRPFVH 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,269,089
Number of Sequences: 27780
Number of extensions: 358227
Number of successful extensions: 966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)