Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_A05
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0470 - 10700092-10700505 149 3e-36
10_08_0951 - 21769342-21769752 149 4e-36
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 35 0.11
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 31 0.98
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 31 1.3
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301... 30 2.3
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063... 30 2.3
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 29 6.9
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 28 9.2
04_04_1327 + 32677408-32677460,32677563-32677658,32677737-326778... 28 9.2
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 28 9.2
>02_02_0470 - 10700092-10700505
Length = 137
Score = 149 bits (361), Expect = 3e-36
Identities = 68/137 (49%), Positives = 98/137 (71%), Gaps = 3/137 (2%)
Frame = +3
Query: 87 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 266
M K +KPGK V++L GRYAGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++
Sbjct: 1 MVKFLKPGKAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 267 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKR-KKLRF--NTRVRFE 437
K K+S++K F+K+VN+ H+MPTRYT+D F+ ++ A R KK+ + R E
Sbjct: 61 KTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKVAACKAAKARLE 120
Query: 438 ERYKSGKNKWFFQKLRF 488
ER+K+GKN+WFF KLRF
Sbjct: 121 ERFKTGKNRWFFTKLRF 137
>10_08_0951 - 21769342-21769752
Length = 136
Score = 149 bits (360), Expect = 4e-36
Identities = 65/136 (47%), Positives = 98/136 (72%), Gaps = 2/136 (1%)
Frame = +3
Query: 87 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 266
M K +KPGK V++L GR+AGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++
Sbjct: 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 267 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRF--NTRVRFEE 440
K K+S++K F+K+VN+ HLMPTRYT+D ++ +A + KK+ + + R E+
Sbjct: 61 KTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLED 120
Query: 441 RYKSGKNKWFFQKLRF 488
R+K+GKN+WFF KLRF
Sbjct: 121 RFKTGKNRWFFTKLRF 136
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 34.7 bits (76), Expect = 0.11
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 78 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 182
P+K+ + PG V+++L+GRY G++ + +K G
Sbjct: 68 PTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSG 102
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 31.5 bits (68), Expect = 0.98
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 122 GPKWPVRGSQGYRSQELRRRYLRQAIRACLRRWYRQ--VPPE-SAQEDGKE*N-PQEVQD 289
G KW + + RS E +R ++ +AIR +R + ++ +PP DG E N +EV D
Sbjct: 1000 GNKWDMCTKEHSRSNEFKRLFVPEAIRKLIRPYDKELSIPPVFPGVHDGNEVNSKEEVND 1059
Query: 290 KA 295
+
Sbjct: 1060 SS 1061
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 137 VRGSQGYRSQELRRRYLRQAIRACLRRWYRQVPPESAQ--EDGKE*NPQEVQDKAFRQGC 310
V G+ G + ++RR+L QA+ + R R PP +A E + P +++ AF +
Sbjct: 24 VAGAGGRKRGRVQRRHLTQALESFWRHAPRPAPPAAAARGEANRSWQPPPLENPAFEEYY 83
Query: 311 KLQSL 325
K Q +
Sbjct: 84 KEQRI 88
>04_03_0540 +
16929782-16929834,16929937-16930032,16930111-16930185,
16930819-16930893,16930987-16931209,16931303-16931546,
16932111-16932568,16932647-16932928,16933032-16933733
Length = 735
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 401 TFCRVFQVFCAEFFKTEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHPLVHF 240
TF + F + TE + WH++I YNL++ +YL + D V+F
Sbjct: 298 TFKKAFHKVLTQTL-TEEEFVAAWHKLIRDYNLEKSVYLRHIWDIRRKWAFVYF 350
>01_06_1350 +
36505926-36505978,36506081-36506176,36506255-36506329,
36506964-36507038,36507132-36507348,36507442-36507685,
36508250-36508707,36508786-36509067,36509171-36509872
Length = 733
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 401 TFCRVFQVFCAEFFKTEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHPLVHF 240
TF + F + TE + WH++I YNL++ +YL + D V+F
Sbjct: 296 TFKKAFHKVLTQTL-TEEEFVAAWHKLIRDYNLEKSVYLRHIWDIRRKWAFVYF 348
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 182
M + PG V+++L+GR+ G++ + +K G
Sbjct: 94 MRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 412 RSFLRFAGSFRSFALNFSKLKSTV*RV 332
RSFL AG +R F NFSK+ ++ R+
Sbjct: 453 RSFLGLAGYYRRFIENFSKIAKSMTRL 479
>04_04_1327 +
32677408-32677460,32677563-32677658,32677737-32677811,
32678446-32678520,32678615-32678837,32678931-32679174,
32679740-32680197,32680276-32680470,32680660-32681361
Length = 706
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 401 TFCRVFQVFCAEFFKTEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHPLVHF 240
TF +VF + TE + WH++I YNL++ + L + D V+F
Sbjct: 298 TFKKVFHKVLTQTL-TEEEFVAAWHKLIRDYNLEKSVNLRHIWDIRRKWAFVYF 350
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 28.3 bits (60), Expect = 9.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 222 IDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF----EKFSAKDLK 386
I Y R++ M ++ + K+K F +NY+H R T ++ E S KDLK
Sbjct: 919 IGTYNRELTSNMRILRMERCDKLKDFTLFLNYDHFRVERKTWQWTILPFEEMHSLKDLK 977
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,853,818
Number of Sequences: 37544
Number of extensions: 419978
Number of successful extensions: 3599
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3256
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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