Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_A04
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 27 0.45
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 25 0.95
06_03_0504 + 21535192-21535194,21535306-21535406,21536964-215370... 31 1.3
02_05_0686 - 30900748-30902167,30903442-30904742 26 2.0
09_02_0327 - 7284829-7284889,7284946-7286126 24 2.7
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740... 26 3.3
09_01_0016 - 376742-376883,377973-378964 24 3.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 24 5.8
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 29 6.7
>07_01_0080 + 587674-588510
Length = 278
Score = 27.5 bits (58), Expect(2) = 0.45
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 833 PPXGGXXFXXXXPXPPPPPP 774
P GG P PPPPPP
Sbjct: 80 PRLGGDGMFRRPPPPPPPPP 99
Score = 23.8 bits (49), Expect(2) = 0.45
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 797 PXPPPPPPXXKKK 759
P PPPPPP ++
Sbjct: 114 PPPPPPPPLFTRR 126
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 25.4 bits (53), Expect(2) = 0.95
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 797 PXPPPPPPXXKK 762
P PPPPPP +K
Sbjct: 534 PPPPPPPPMNRK 545
Score = 24.6 bits (51), Expect(2) = 0.95
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -3
Query: 821 GXXFXXXXPXPPPPPP 774
G + P PPPPPP
Sbjct: 524 GPFYGPPYPAPPPPPP 539
>06_03_0504 +
21535192-21535194,21535306-21535406,21536964-21537042,
21537128-21537175
Length = 76
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +2
Query: 149 TSPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVAAXXXXXXXX 328
+SP+ +P A FF+YE TS++ +R + KE+ + +A+
Sbjct: 7 SSPVPVDWYPTLAVVMVAVGLMFTASFFIYEATSSRRNRSLAKEIATATIASVFLGFGSL 66
Query: 329 XXXXWVGIYV 358
G+YV
Sbjct: 67 FVLLASGVYV 76
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 25.8 bits (54), Expect(2) = 2.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 797 PXPPPPPPXXKKK 759
P PPPPPP KK
Sbjct: 362 PSPPPPPPPGGKK 374
Score = 23.0 bits (47), Expect(2) = 2.0
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 833 PPXGGXXFXXXXPXPPPPPP 774
PP G PPPPPP
Sbjct: 339 PPPKGPPPPPPAKGPPPPPP 358
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 24.2 bits (50), Expect(2) = 2.7
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 812 FXXXXPXPPPPPP 774
F P PPPPPP
Sbjct: 49 FGAHPPPPPPPPP 61
Score = 24.2 bits (50), Expect(2) = 2.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 797 PXPPPPPPXXKK 762
P PPPPPP ++
Sbjct: 60 PPPPPPPPRGRR 71
>01_05_0552 -
23173106-23173184,23173266-23173411,23173543-23174022,
23174106-23174161,23175538-23175637,23175708-23175765,
23176163-23176278,23176915-23176974,23177297-23177383,
23178250-23178341,23178409-23178587,23178946-23179087,
23179655-23179706,23180241-23180473,23180569-23180745,
23180882-23181044,23181242-23181392,23181493-23181574,
23182193-23182332,23182499-23183013
Length = 1035
Score = 25.8 bits (54), Expect(2) = 3.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 775 GGGGGGXGXXXXKXXPPXG 831
GGGGGG G PP G
Sbjct: 109 GGGGGGGGGGGGSQQPPYG 127
Score = 22.2 bits (45), Expect(2) = 3.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 763 FFXXGGGGGGXG 798
F GGGGGG G
Sbjct: 102 FLRGGGGGGGGG 113
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 24.2 bits (50), Expect(2) = 3.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 812 FXXXXPXPPPPPP 774
F P PPPPPP
Sbjct: 57 FVAPPPPPPPPPP 69
Score = 23.8 bits (49), Expect(2) = 3.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 797 PXPPPPPPXXKKK 759
P PPPPPP K
Sbjct: 63 PPPPPPPPQQNGK 75
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 23.8 bits (49), Expect(2) = 5.8
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -3
Query: 833 PPXGGXXFXXXXPXPPPPP 777
PP G P PPPPP
Sbjct: 96 PPPYGVNSSQPPPPPPPPP 114
Score = 23.4 bits (48), Expect(2) = 5.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 797 PXPPPPPP 774
P PPPPPP
Sbjct: 121 PPPPPPPP 128
>02_04_0067 - 19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 226 PGREEYSYSEQQKG*MWKNCRVYWR 152
P R + EQ K +WK C YWR
Sbjct: 1117 PTRFPQKFREQLKACIWKQCLSYWR 1141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,094
Number of Sequences: 37544
Number of extensions: 278377
Number of successful extensions: 6707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5484
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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