Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_A04
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024833-1|AAK85505.1|   79|Caenorhabditis elegans Hypothetical ...    50   3e-06
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    25   2.2  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    25   2.3  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    25   2.4  
AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical...    30   2.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.5  

>AC024833-1|AAK85505.1|   79|Caenorhabditis elegans Hypothetical
           protein Y57E12AM.1 protein.
          Length = 79

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 26/79 (32%), Positives = 39/79 (49%)
 Frame = +2

Query: 122 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVA 301
           ++I  M RYT+P+N A  P              A F + +VTSTK +R++ KEL ++  +
Sbjct: 1   MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60

Query: 302 AXXXXXXXXXXXXWVGIYV 358
           +            WVGIYV
Sbjct: 61  SVFLGFGSVFLLLWVGIYV 79


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 24.6 bits (51), Expect(2) = 2.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 797  PXPPPPPPXXKK 762
            P PPPPPP   K
Sbjct: 1356 PPPPPPPPTMSK 1367



 Score = 23.8 bits (49), Expect(2) = 2.2
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 833  PPXGGXXFXXXXPXPPPPPP 774
            PP          P PPPPPP
Sbjct: 1342 PPPPPPPSDDLTPVPPPPPP 1361


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 24.6 bits (51), Expect(2) = 2.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 797 PXPPPPPPXXK 765
           P PPPPPP  K
Sbjct: 86  PPPPPPPPTLK 96



 Score = 23.8 bits (49), Expect(2) = 2.3
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 833 PPXGGXXFXXXXPXPPPPPP 774
           PP          P PPPPPP
Sbjct: 72  PPPPLISILQQAPPPPPPPP 91


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 24.6 bits (51), Expect(2) = 2.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 833 PPXGGXXFXXXXPXPPPPPP 774
           PP          P PPPPPP
Sbjct: 503 PPIATPSSVPPPPPPPPPPP 522



 Score = 23.8 bits (49), Expect(2) = 2.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 797 PXPPPPPPXXKKK 759
           P PPPPPP  +++
Sbjct: 516 PPPPPPPPALEQE 528


>AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical
           protein Y73F8A.30 protein.
          Length = 540

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 41  DFALSFVEFYLVLFFIVFRSKIAIKMSLEIESMIRYTSPINPAV 172
           DF   F  FYL + FI+F   +     L +     Y  P++P V
Sbjct: 276 DFVPLFGIFYLSIIFIIFIGTLFTAFILNVHLQKMYAKPVSPIV 319


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 833 PPXGGXXFXXXXPXPPPPPP 774
           PP GG       P PPPPPP
Sbjct: 746 PPPGGLPPISGGPPPPPPPP 765


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 833 PPXGGXXFXXXXPXPPPPPP 774
           PP GG       P PPPPPP
Sbjct: 746 PPPGGLPPISGGPPPPPPPP 765


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 833 PPXGGXXFXXXXPXPPPPPP 774
           PP GG       P PPPPPP
Sbjct: 329 PPPGGLPPISGGPPPPPPPP 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,027,734
Number of Sequences: 27780
Number of extensions: 230778
Number of successful extensions: 1973
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)