Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_A02
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 53 6e-08
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 30 0.39
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 29 1.2
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 1.2
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 29 1.2
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.6
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.6
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 28 1.6
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 28 1.6
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 28 2.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 3.6
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 27 4.8
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 27 4.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.3
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 26 6.3
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 6.3
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 8.4
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 26 8.4
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 8.4
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 52.8 bits (121), Expect = 6e-08
Identities = 52/235 (22%), Positives = 106/235 (45%), Gaps = 24/235 (10%)
Frame = +3
Query: 177 MSALVFKIKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDN 356
MS+L ++K +N Q ++ + + +TVG +++ + + + G+PP+ + ++
Sbjct: 1 MSSLRLRLKYEN-QSAVETVEANATVGSFLDLVAAKFSLPRNSIALKFGFPPQDIPLVNS 59
Query: 357 SKTLSELGLKTGETLIVEEKAVTKI-----------NATQTETRPSQNGVE-----SHET 488
LS L + +G+ ++V + A T NA T P Q + SH++
Sbjct: 60 DVPLSTL-VSSGQQILVLKNAATSFSTNEPAKPPIPNAATKPTFPPQTEISNPPAVSHQS 118
Query: 489 IESCRP--------GILMKKVVPSDNSCLFTSIGFVLNGSIDTSVHTLMRQ**LWRWPVT 644
+ + G + +V+P DNSCLF ++ L G + ++ L +
Sbjct: 119 KNTSQDPPYVSTPIGDIALRVMPDDNSCLFRALSKPL-GFSPYELREIVANQVLSNPDIY 177
Query: 645 ATHTMKHAWQPNAEYCDWIQQPSSWGGAIEVAXYLDFTGLXMAVGDTLNAIINRF 809
+T + +P+ EY WI++ +SWGG IE++ G+ + D ++ +
Sbjct: 178 STAILG---KPSIEYASWIRKETSWGGYIELSILSSHFGVEICSVDVKTGRVDSY 229
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 30.3 bits (65), Expect = 0.39
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +3
Query: 447 ETRPSQNGVESHETIESCRPGILMKKVVPSDNSCLFTSIGFVLNGSIDTSVHTLMRQ**L 626
ETR + V ++T +S P + ++ S N +FT GF ++H ++R L
Sbjct: 475 ETREAVQHVRKNDTSQSPSPSFCQRSIMDSKNHRIFTMFGFE-----QRNIHKVLRP-SL 528
Query: 627 WRWPVTATHTMK 662
W + +T +K
Sbjct: 529 WIFYITTEEWVK 540
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Frame = +3
Query: 528 VPSDNSCLFTSIGFVLNGSIDTSVHTLMRQ**LWRWPVTATHTMKHAWQ----------- 674
+P+D +CLF SI LN + +++ + +A + +KH Q
Sbjct: 190 IPADGNCLFASISHQLNYHHNVKLNSQALR------NKSADYVLKHCEQFEGFLLDEESG 243
Query: 675 ---PNAEYCDWIQQPSSWGGAIEV 737
P ++YC+ I+ S WG IE+
Sbjct: 244 EVLPVSDYCNEIRNNSKWGSDIEI 267
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 153 RKNTSQVKMSALVFKIKSKNGQQVLKDLTS-ESTVGELKMFLSSISDISIERVNILCGYP 329
RK + + SA+ K +N ++D TS ES++ +++ FLS ++ V++ CG+
Sbjct: 1341 RKKRNWDRRSAIARK---ENRYMSVEDATSRESSISKVESFLSRFPSKTLGIVSLNCGFH 1397
Query: 330 PKAL 341
+AL
Sbjct: 1398 ARAL 1401
>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 128
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 285 SDISIERVNILCGYPPKALDTSDNSKTLSELGLKTGETLIVEEKAVTKIN 434
S +S++R IL G PPK + ++ L +GL+ ++ E+ + K+N
Sbjct: 7 SKVSLKR--ILQGNPPKPIGLTEYGHLLRLVGLREADSKEENERTILKLN 54
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 649 VAVTGHLHSYYCLINVCTDVSMLPFKTKPMLVK-RHELSE--GTTFFINIPGRHDSI 488
VA G LH CL ++ D + +P K P +V R +SE T P +H+ I
Sbjct: 530 VAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHNRI 586
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 649 VAVTGHLHSYYCLINVCTDVSMLPFKTKPMLVK-RHELSE--GTTFFINIPGRHDSI 488
VA G LH CL ++ D + +P K P +V R +SE T P +H+ I
Sbjct: 530 VAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHNRI 586
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 47 GFLKKGRYXYIFVRNLFVEILMYFCDPITIQINYRTKKHESSKDV 181
G K G+ Y+ +RN+ +EI Y+ P + + Y ++E+ V
Sbjct: 540 GEAKPGKAVYVELRNVPIEIFEYYNKPWNLLVLYSLLQYENKLTV 584
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 225 LKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNS 359
L ++T E+ + + ++ + S E+V ILCGY K LD D++
Sbjct: 186 LTNITRENFKRAFTLHIGTLLEHS-EKVAILCGYAKKILDLLDDT 229
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 153 RKNTSQVKMSALVFKIKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERV 308
+K S+ MS V +NG++V LT TV S D+S ER+
Sbjct: 360 QKRASETSMSTNVSLPYYQNGRRVRNILTPYPTVSLASTMTSETEDVSEERI 411
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 273 LSSISDISIER-VNILCGYPPKALDTSDNSKTLSELGLKTGETLIVEEKAVT 425
L+S+ D +I+ ++ C PPK ++++ S LK+G I+ KAVT
Sbjct: 781 LTSLIDNAIQLFASMFCHQPPKVMESTLEIMVASVTNLKSGRD-ILRYKAVT 831
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 334 LGGYPHNILTLSMLISDMLDKNIFNSPTVLSEVKSFK 224
L YP L + SD L + NSP V +E+ FK
Sbjct: 602 LKNYPEPNLIIEKYGSDALRLYLINSPVVRAEILKFK 638
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 26.6 bits (56), Expect = 4.8
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 198 IKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 377
+K+ G+ + ++ S T+ +K + I ++ ++ + K L+ + +TLS+
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLSDY 59
Query: 378 GLKTGETL--IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSCL 551
++ TL ++ + +I + VES +TI++ + I K+ +P D L
Sbjct: 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 119
Score = 26.6 bits (56), Expect = 4.8
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 198 IKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 377
+K+ G+ + ++ S T+ +K + I ++ ++ + K L+ + +TLS+
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLSDY 135
Query: 378 GLKTGETL--IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSCL 551
++ TL ++ + +I + VES +TI++ + I K+ +P D L
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 195
Score = 26.6 bits (56), Expect = 4.8
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 198 IKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 377
+K+ G+ + ++ S T+ +K + I ++ ++ + K L+ + +TLS+
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLSDY 211
Query: 378 GLKTGETL--IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSCL 551
++ TL ++ + +I + VES +TI++ + I K+ +P D L
Sbjct: 212 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 271
Score = 26.6 bits (56), Expect = 4.8
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 198 IKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 377
+K+ G+ + ++ S T+ +K + I ++ ++ + K L+ + +TLS+
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLSDY 287
Query: 378 GLKTGETL--IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSCL 551
++ TL ++ + +I + VES +TI++ + I K+ +P D L
Sbjct: 288 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 347
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 853 PSXAERRAAQIXSSPNLLMIAFRVSPTAXXKPVKSR*XATSIAPPQELG 707
P+ AA + S+P + R SP A +PV+ +IAP LG
Sbjct: 1535 PAPQHPSAAALSSAPADNSMPHRSSPYAPQEPVQKPQAINNIAPATNLG 1583
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 737 YLNRSSPRAGLLYPIAIFSIWLPSMLHCMCRG 642
+L +SP + +P+AIF W PS + + +G
Sbjct: 275 FLCLASPLFTMNFPMAIFMYWFPSNVFSVFQG 306
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 324 YPPKALDTSDNSKTLSELGLKTGETL 401
YPP ALDT + L++ G+ T+
Sbjct: 592 YPPYALDTDTETHDLAQFGVSPNATM 617
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 744 KXLPQSLLPKSWAAVSNRNIQHLVAKHASLYVS 646
K L K W V+++N L++KH Y S
Sbjct: 1027 KLLSNDFSKKKWKVVASKNAFALLSKHRYFYAS 1059
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 204 SKNGQQVLKDLTSESTVGELKMFLSSISDISIE-RVNILCGY 326
S NG+ +L+D S V ++ +ISDI + + CGY
Sbjct: 184 STNGEIILRDPNSFQPVNKVVAHTGTISDIDTSGNLLLSCGY 225
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +3
Query: 207 KNGQQ---VLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 377
KN QQ V+ D+++++ + ELK + + + +ER ++ Y + L + KT+ E
Sbjct: 6 KNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLI--YSGRIL---ADDKTVGEY 60
Query: 378 GLKTGETLI-VEEKAVTKINATQTETRPSQN 467
+K + ++ + + T + ++ P+ N
Sbjct: 61 NIKEQDFIVCMVSRPKTSTSTPKSAASPAPN 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,129
Number of Sequences: 5004
Number of extensions: 67398
Number of successful extensions: 208
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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