Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_A02
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0484 + 3471527-3471591,3471679-3471724,3472468-3472576,347... 62 6e-10
02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055... 33 0.31
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 31 1.2
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 30 2.2
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 5.0
07_03_1724 + 29056386-29056717,29057026-29057245,29057334-290575... 29 6.7
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 29 6.7
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350... 28 8.8
07_01_1015 - 8633240-8633411,8633852-8633895 28 8.8
>02_01_0484 +
3471527-3471591,3471679-3471724,3472468-3472576,
3473023-3473114,3473196-3473258,3473346-3473464,
3473752-3473827,3473925-3473981
Length = 208
Score = 62.1 bits (144), Expect = 6e-10
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Frame = +3
Query: 507 GILMKKVVPSDNSCLFTSIGFVLNGSIDTSVHTLMRQ**LWRWPVT-ATHTMKHAWQPNA 683
G+++++V+PSDNSCLF ++G+V+ + + + +RQ A ++ +PN
Sbjct: 3 GVVVRRVIPSDNSCLFNAVGYVMEHNRNKASE--LRQVIAAAVASDPAKYSEVFLGKPNE 60
Query: 684 EYCDWIQQPSSWGGAIEVAXYLDFTGLXMAVGDTLNAIINRFGEDXIWAARLSAL-DGVX 860
YC WI WGGAIE++ ++ G +A D + +G++ + R + DG+
Sbjct: 61 AYCAWILDSEKWGGAIELSILSEYYGREIAAYDIQTTRCDLYGQEKNYTERTMLIYDGLH 120
Query: 861 XXPLYXNIRRGA 896
L + GA
Sbjct: 121 YDALAMSPFEGA 132
>02_05_1231 -
35104832-35105002,35105104-35105167,35105267-35105557,
35105755-35105999,35106410-35106489,35106890-35107006,
35107150-35108002,35108081-35108161
Length = 633
Score = 33.1 bits (72), Expect = 0.31
Identities = 24/86 (27%), Positives = 45/86 (52%)
Frame = +3
Query: 144 IIERKNTSQVKMSALVFKIKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCG 323
+ K++ +VK++ IKS N ++L ++ +TVG LK +S IER + G
Sbjct: 342 LYSEKSSDEVKLT-----IKSFNIPELLIEIPENATVGSLKKTVSDAVTTIIER-GLRVG 395
Query: 324 YPPKALDTSDNSKTLSELGLKTGETL 401
+ + +++KTL + G+ G+ L
Sbjct: 396 ILLQGKNIQNDNKTLRQAGICRGKKL 421
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +3
Query: 171 VKMSALVFKIKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTS 350
V+ + + ++ +G + LT + + ++K F+ ++ YP K
Sbjct: 260 VRSNDIQLVVRIPDGPSLQIKLTKDDNLRKVKNFVDENRANGAGSYDLAMLYPRKVFTEQ 319
Query: 351 DNSKTLSELGLKTGETL-IVEEKAVTKINATQTETRPSQ 464
D TL ELG++T + L IV + Q+ + P +
Sbjct: 320 DMEATLHELGIETRQALTIVPHHKTIRAAKRQSSSSPHE 358
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/63 (22%), Positives = 34/63 (53%)
Frame = +3
Query: 195 KIKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSE 374
+++ +G +++ TVG+++ F+ + + + G+PPK L +D ++T+ +
Sbjct: 272 QLRLADGTRMVARFNMHHTVGDIRSFIDASRPGATRPYQLQTGFPPKQL--ADPAQTVEQ 329
Query: 375 LGL 383
GL
Sbjct: 330 AGL 332
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 610 INVCTDVSMLPFKTKPMLVKRHELSEGTTFFINIP 506
IN C+ +S+LP +T VK LS T++ +P
Sbjct: 1100 INACSKLSLLPIETLSSSVKELHLSSCTSYISMLP 1134
>07_03_1724 +
29056386-29056717,29057026-29057245,29057334-29057530,
29057628-29057988
Length = 369
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 724 PPQELGCCIQSQYSAFGCQACFIVC 650
PP + G + S Y G CF+VC
Sbjct: 209 PPLQFGSAVMSWYEHIGRTVCFLVC 233
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +3
Query: 408 EEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSCLFTSIGFVLNGSI 587
+ K VT N+ TR +++ + SH+ IE +PG+L+ + + + G +N
Sbjct: 183 QNKRVTNTNSLYL-TRYAKDCMNSHQRIEIIKPGLLVSNEETNIDDLQDGTFG--VNSDN 239
Query: 588 DTSVH 602
D S+H
Sbjct: 240 DVSIH 244
>11_04_0281 +
15733505-15733647,15734366-15734443,15734835-15735077,
15735868-15736012,15736234-15736293,15736376-15736471,
15736651-15737067,15737824-15737964,15738043-15738213,
15738394-15738651,15738741-15738889,15739060-15739557,
15740147-15740420,15740631-15740696,15740891-15741057,
15741413-15741497,15741673-15741732
Length = 1016
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 213 GQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDN-SKTLSELGLKT 389
G+Q + ++ + TVGEL + D+ + V I Y DN KTL + ++
Sbjct: 193 GEQAVIRISKKDTVGELHKKACEVFDLIPDEVCIWDYYGRTRHSLMDNLEKTLDDANIQM 252
Query: 390 GETLIVE 410
+ ++VE
Sbjct: 253 DQDILVE 259
>07_01_1015 - 8633240-8633411,8633852-8633895
Length = 71
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 144 IIERK--NTSQVKMSALVFKIKSKNGQQVLKDLTSESTVGELKMFLSSISDISIE 302
I ERK +T + A + ++ ++ +++LKD+ + ELK F S D +E
Sbjct: 5 IYERKKEDTQRCYRDASLLRLSERSEEKILKDVVHSVQLLELKQFFSLDKDSDME 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,118,537
Number of Sequences: 37544
Number of extensions: 394230
Number of successful extensions: 928
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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