Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_P23
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    64   4e-11
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    29   0.95 
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    27   5.1  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    27   5.1  

>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 63.7 bits (148), Expect = 4e-11
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
 Frame = +2

Query: 551 LSFPRRPPWDFNMTAAQLDAQEHRYFKNY---IDKLQASEHWKDISYFEMNLETWRQLWR 721
           L+ PRRP WD   TA +LD  E   F N+   + +LQ  E +  ++ FE NLE WRQLWR
Sbjct: 108 LTIPRRPHWDQTTTAVELDRMERESFLNWRRNLAQLQDVEGFI-VTPFERNLEIWRQLWR 166

Query: 722 VLXMCDILLWIVD 760
           V+   D+++ IVD
Sbjct: 167 VIERSDVVVQIVD 179


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 386 PSRGRGGRDTNRYALKFYRETEDELKIKKEDSLRALSPVPE 508
           P      R   R    F  ETE+ELK+KK D L  L  + E
Sbjct: 416 PLASISSRKVVRMKYSFEPETENELKLKKGDLLLVLKEIDE 456


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 686 EMNLETWRQLWRVLXMCDILLWIVDV 763
           EM + TWRQLW  L + +  L +  +
Sbjct: 27  EMRINTWRQLWLNLAIAEKQLGLTQI 52


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 722 PSTTDAMSPDSFQNRKCPSNVPR 654
           PS+TD +SPDS +  K  S++P+
Sbjct: 159 PSSTDLLSPDSQKLSKSSSDLPQ 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,153
Number of Sequences: 5004
Number of extensions: 56997
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)