Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_P23
         (944 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702...    65   9e-11
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702...    63   4e-10
03_02_0843 - 11690176-11690820,11690930-11690961,11691115-11691235     29   4.1  
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673...    29   7.1  

>03_05_0491 -
           24868261-24869383,24869482-24869561,24870193-24870249,
           24870567-24870660,24871013-24871099,24871188-24871347,
           24871440-24871674
          Length = 611

 Score = 64.9 bits (151), Expect = 9e-11
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
 Frame = +2

Query: 551 LSFPRRPPWDFNMTAAQLDAQEHRYFKNYIDKLQASEHWKDI--SYFEMNLETWRQLWRV 724
           L  PRRPPW   MT  +LDA E R F  +   L   E  + +  + FE N++ WRQLWRV
Sbjct: 127 LKVPRRPPWTPQMTVEELDANEKRAFLEWRRNLARLEENEKLVLTPFEKNIDIWRQLWRV 186

Query: 725 LXMCDILLWIVD 760
           L   D+L+ +VD
Sbjct: 187 LERSDLLVMVVD 198


>12_02_1133 -
           26368323-26369457,26369556-26369635,26370145-26370201,
           26370508-26370601,26371006-26371092,26371179-26371268,
           26371396-26371649
          Length = 598

 Score = 62.9 bits (146), Expect = 4e-10
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
 Frame = +2

Query: 551 LSFPRRPPWDFNMTAAQLDAQEHRYF---KNYIDKLQASEHWKDISYFEMNLETWRQLWR 721
           L  PRRPPW+  MT  +LD  E R F   +  + +L+ ++    ++ FE N++ WRQLWR
Sbjct: 110 LRVPRRPPWNSRMTVEELDENERRAFLVWRRNLARLEENDKLV-LTPFEKNIDIWRQLWR 168

Query: 722 VLXMCDILLWIVD 760
           VL   D+L+ +VD
Sbjct: 169 VLERSDLLVMVVD 181


>03_02_0843 - 11690176-11690820,11690930-11690961,11691115-11691235
          Length = 265

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 572 PWDFNMTAAQLDAQEHRYFKNYIDKLQ--ASEHWKDISYFEMNL 697
           P +FN+T  + D    RY+++YI +L+    +  K I YF  +L
Sbjct: 129 PGNFNITQGEHDTARIRYYRDYITELKKVIDDGAKVIGYFAWSL 172


>06_01_0878 +
           6735266-6735340,6735946-6736041,6738610-6738720,
           6738816-6739309,6739422-6739587,6739666-6739789,
           6739874-6739986,6740085-6740693,6743095-6743385,
           6743845-6743913,6744099-6744188,6744281-6744696,
           6744882-6744969
          Length = 913

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 252 KHVGRPRSAGRPKNNSCSLRSRTRFYLCLHRQEQ 353
           + VGRP   G PK++   +R R R+ L     EQ
Sbjct: 211 RKVGRPPKGGTPKDDYLMIRKRVRYVLNRMNYEQ 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,760,869
Number of Sequences: 37544
Number of extensions: 355949
Number of successful extensions: 840
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)