Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_P23
(944 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 41 0.001
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 30 2.1
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 30 2.1
Z66524-9|CAA91422.3| 696|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z66524-8|CAH10782.1| 753|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z66523-11|CAA91417.3| 696|Caenorhabditis elegans Hypothetical p... 29 6.4
Z66523-10|CAH04723.1| 753|Caenorhabditis elegans Hypothetical p... 29 6.4
AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein. 28 8.5
AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle defec... 28 8.5
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 551 LSFPRRPP---WDFNMTAAQLDAQEHRYFKNYIDKLQASEHWKDISYFEMNLETWRQLWR 721
L PRRP W+ +L+ + +++ + +LQ + ++ FE N + WR+LWR
Sbjct: 118 LRIPRRPAKELWENMEDLTKLENEAFLQWRSDLSELQEVDGLV-LTPFERNPDMWRELWR 176
Query: 722 VLXMCDILLWIVD 760
V+ DI++ IVD
Sbjct: 177 VVEKSDIIVQIVD 189
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 704 WRQLWRVLXMCDILLWIVD 760
WR+LWRV+ DI++ IVD
Sbjct: 2 WRELWRVVEKSDIIVQIVD 20
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 704 WRQLWRVLXMCDILLWIVD 760
WR+LWRV+ DI++ IVD
Sbjct: 2 WRELWRVVEKSDIIVQIVD 20
>Z66524-9|CAA91422.3| 696|Caenorhabditis elegans Hypothetical
protein T13H5.1a protein.
Length = 696
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 557 FPRRPPWDFN-MTAAQLDAQEHRYFKN--YIDKLQASEHW---KDISYFEMNLETWRQLW 718
+P P+D+N + ++D E+ ++ N Y++ + + + + MN E WR +W
Sbjct: 88 YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 147
Query: 719 RVLXMCDILL 748
+ C ++L
Sbjct: 148 ELGSNCIVML 157
>Z66524-8|CAH10782.1| 753|Caenorhabditis elegans Hypothetical
protein T13H5.1b protein.
Length = 753
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 557 FPRRPPWDFN-MTAAQLDAQEHRYFKN--YIDKLQASEHW---KDISYFEMNLETWRQLW 718
+P P+D+N + ++D E+ ++ N Y++ + + + + MN E WR +W
Sbjct: 145 YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 204
Query: 719 RVLXMCDILL 748
+ C ++L
Sbjct: 205 ELGSNCIVML 214
>Z66523-11|CAA91417.3| 696|Caenorhabditis elegans Hypothetical
protein T13H5.1a protein.
Length = 696
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 557 FPRRPPWDFN-MTAAQLDAQEHRYFKN--YIDKLQASEHW---KDISYFEMNLETWRQLW 718
+P P+D+N + ++D E+ ++ N Y++ + + + + MN E WR +W
Sbjct: 88 YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 147
Query: 719 RVLXMCDILL 748
+ C ++L
Sbjct: 148 ELGSNCIVML 157
>Z66523-10|CAH04723.1| 753|Caenorhabditis elegans Hypothetical
protein T13H5.1b protein.
Length = 753
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 557 FPRRPPWDFN-MTAAQLDAQEHRYFKN--YIDKLQASEHW---KDISYFEMNLETWRQLW 718
+P P+D+N + ++D E+ ++ N Y++ + + + + MN E WR +W
Sbjct: 145 YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 204
Query: 719 RVLXMCDILL 748
+ C ++L
Sbjct: 205 ELGSNCIVML 214
>AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein.
Length = 529
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 440 RETEDELKIKKEDSLRALSPVPEKEMEINSLDYFPVDLSFPRRPP 574
RE + EL++KKE+ R SP P + F +S + P
Sbjct: 398 RELKFELQLKKEEKTRMQSPTPTRTPRTQKRAMFRTPMSTAKMEP 442
>AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle
defective protein 1 protein.
Length = 529
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 440 RETEDELKIKKEDSLRALSPVPEKEMEINSLDYFPVDLSFPRRPP 574
RE + EL++KKE+ R SP P + F +S + P
Sbjct: 398 RELKFELQLKKEEKTRMQSPTPTRTPRTQKRAMFRTPMSTAKMEP 442
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,445,261
Number of Sequences: 27780
Number of extensions: 329931
Number of successful extensions: 902
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -