Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_P22
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   154   1e-38
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   153   3e-38
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    29   1.2  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  154 bits (374), Expect = 1e-38
 Identities = 70/131 (53%), Positives = 94/131 (71%)
 Frame = +1

Query: 91  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 270
           V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI RH
Sbjct: 4   VSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63

Query: 271 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 450
           IY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR +
Sbjct: 64  IYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRI 123

Query: 451 TTQGRRDLDRI 483
           + QG+RDLDRI
Sbjct: 124 SQQGQRDLDRI 134


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  153 bits (371), Expect = 3e-38
 Identities = 69/131 (52%), Positives = 94/131 (71%)
 Frame = +1

Query: 91  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 270
           V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI RH
Sbjct: 4   VSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63

Query: 271 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 450
           IY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR +
Sbjct: 64  IYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRI 123

Query: 451 TTQGRRDLDRI 483
           + QG+RDLDRI
Sbjct: 124 SQQGQRDLDRI 134


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 67  QHKARCVPVTVKDV-EQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 201
           QH  R VP+  + + E   I K  AA+   T  +K PE +DL+  A
Sbjct: 795 QHGCRAVPLDGRVLCEPTTISKATAANYIMTHLIKNPEELDLILVA 840


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,177
Number of Sequences: 5004
Number of extensions: 42348
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)