Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_P16
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   219   3e-58
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   219   3e-58
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    34   0.033
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   6.5  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   8.6  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  219 bits (536), Expect = 3e-58
 Identities = 101/135 (74%), Positives = 117/135 (86%)
 Frame = +2

Query: 104 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 283
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 284 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 463
            EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 464 RGMRHYWGLRVRGQH 508
           RG+RH   LRVRGQH
Sbjct: 121 RGLRHALDLRVRGQH 135


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  219 bits (536), Expect = 3e-58
 Identities = 101/135 (74%), Positives = 117/135 (86%)
 Frame = +2

Query: 104 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 283
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 284 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 463
            EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 464 RGMRHYWGLRVRGQH 508
           RG+RH   LRVRGQH
Sbjct: 121 RGLRHALDLRVRGQH 135


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 431 DLERLKKIRAHRGMRHYWGLRVRGQH 508
           D+ RL  IR +RGMRH  GL V GQ+
Sbjct: 76  DISRLVNIRCYRGMRHVNGLPVNGQN 101


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 316 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 206
           +++D  F+ F C F+     +  G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 163 DVRIHDTKNMLKFVWNDQRHFG*VSNQRSQTQXQGKRKAK 44
           D  + +  + +KF WN       VSN +S+     K+ +K
Sbjct: 147 DKAVENNSDFIKFDWNSDEDEDSVSNDKSKNNESLKKSSK 186


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 434 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 333
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,603
Number of Sequences: 5004
Number of extensions: 46946
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)