Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_P15
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.81
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.81
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.81
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.1
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.3
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.3
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 5.7
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 5.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 10.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 870 PPXXXGXKXXXPPPXGXXXKXPPPPP 793
PP G PPP G PPPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 867 PXXXGXKXXXPPPXGXXXKXPPPPPP 790
P G PPP G PPPPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 871 PPXXXGXKXXXXPPPXXXXXXXPPPPPP 788
PP G PPP PPPPPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 870 PPXXXGXKXXXPPPXGXXXKXPPPPPP 790
PP PPP G PPPPPP
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 870 PPXXXGXKXXXPPPXGXXXKXPPPPP 793
PP G PPP G PPPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 867 PXXXGXKXXXPPPXGXXXKXPPPPPP 790
P G PPP G PPPPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 871 PPXXXGXKXXXXPPPXXXXXXXPPPPPP 788
PP G PPP PPPPPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 870 PPXXXGXKXXXPPPXGXXXKXPPPPPP 790
PP PPP G PPPPPP
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 870 PPXXXGXKXXXPPPXGXXXKXPPPPP 793
PP G PPP G PPPPP
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPP 360
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 867 PXXXGXKXXXPPPXGXXXKXPPPPPP 790
P G PPP G PPPPPP
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPP 360
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 871 PPXXXGXKXXXXPPPXXXXXXXPPPPPP 788
PP G PPP PPPPPP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 870 PPXXXGXKXXXPPPXGXXXKXPPPPPP 790
PP PPP G PPPPPP
Sbjct: 347 PPGGCPPPPPPPPPGGFKGGPPPPPPP 373
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 869 PPFXGXKXXXXPPPXXXXXKXPPPPPP 789
PP G PPP PPPPPP
Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPPPPP 304
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -1
Query: 868 PXXXGXKXXXXPPPXXXXXXXPPPPPP 788
P G PPP PPPPPP
Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPPPPP 304
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 869 PPFXGXKXXXXPPPXXXXXKXPPPPPP 789
PP G PPP PPPPPP
Sbjct: 288 PPTPGMTPRPPPPPSSGMWPPPPPPPP 314
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -1
Query: 868 PXXXGXKXXXXPPPXXXXXXXPPPPPP 788
P G PPP PPPPPP
Sbjct: 288 PPTPGMTPRPPPPPSSGMWPPPPPPPP 314
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 837 PPPXGXXXKXPPPPPP 790
PPP G + PPPPPP
Sbjct: 44 PPPCGGGYEAPPPPPP 59
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -2
Query: 525 PKXTXFXPPXFXWGVXPXPPXXFFSXXXPHYPXXKGXPPP 406
P F PP G P PP F P P G PPP
Sbjct: 68 PVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 837 PPPXGXXXKXPPPPPP 790
PPP G PPPPPP
Sbjct: 541 PPPVGMANGGPPPPPP 556
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -1
Query: 868 PXXXGXKXXXXPPPXXXXXXXPPPPPP 788
P G PPP PPPPPP
Sbjct: 530 PLSTGAPTPPPPPPVGMANGGPPPPPP 556
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 504 PPXFXWGVXPXPPXXFFSXXXPHYPXXKGXPPP 406
PP F G P PP F PH+ +G PPP
Sbjct: 290 PPPF--GFFPPPPRGHFPPPPPHF-MGRGMPPP 319
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 504 PPXFXWGVXPXPPXXFFSXXXPHYPXXKGXPPP 406
PP F G P PP F PH+ +G PPP
Sbjct: 290 PPPF--GFFPPPPRGHFPPPPPHF-MGRGMPPP 319
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 837 PPPXGXXXKXPPPPPP 790
PPP G PPPPPP
Sbjct: 664 PPPGGLGGFMPPPPPP 679
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 837 PPPXGXXXKXPPPPPP 790
PPP G PPPPPP
Sbjct: 664 PPPGGLGGFMPPPPPP 679
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -1
Query: 871 PPXXXGXKXXXXPPPXXXXXXXPPPPPP 788
P G PPP PPPPPP
Sbjct: 569 PQNLSGAPPPPPPPPPMLGGPPPPPPPP 596
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,801,027
Number of Sequences: 27780
Number of extensions: 263144
Number of successful extensions: 4442
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2618
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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