Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_P14
(916 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase w... 33 1.1
X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2 pr... 33 1.1
BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein. 32 3.3
BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein. 32 3.3
AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein. 32 3.3
AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein. 31 4.4
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 7.7
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 7.7
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 7.7
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 7.7
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 7.7
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 7.7
>Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase with
SH3 domain, leucine zipper domain and proline rich
protein.
Length = 953
Score = 33.5 bits (73), Expect = 1.1
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = -3
Query: 689 ERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 510
ER G+ GS+Q S+ G++P + GFA+ + +F +A GG + +P +
Sbjct: 573 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 630
Query: 509 RPFYGSWP 486
P Y S P
Sbjct: 631 TPSYLSVP 638
>X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2
protein.
Length = 954
Score = 33.5 bits (73), Expect = 1.1
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = -3
Query: 689 ERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 510
ER G+ GS+Q S+ G++P + GFA+ + +F +A GG + +P +
Sbjct: 574 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 631
Query: 509 RPFYGSWP 486
P Y S P
Sbjct: 632 TPSYLSVP 639
>BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein.
Length = 299
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 691 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 563
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein.
Length = 293
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 691 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 563
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein.
Length = 482
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 691 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 563
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein.
Length = 326
Score = 31.5 bits (68), Expect = 4.4
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 635 LVRSPVPTLPLTGYLSAFLPSGSVALSHS 721
+ R PV T+P+ L AF GSV LSHS
Sbjct: 161 IFRGPVATIPIVLLLKAFPYCGSVVLSHS 189
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 30.7 bits (66), Expect = 7.7
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -3
Query: 866 RAISRVLPGWXQDDSYRIRXSGRAERGVRAHSPAWSERXTPN*DT---YSVSYEKAPRFP 696
R+ S PGW + + + R R+ R R+HS + + R T S + P
Sbjct: 533 RSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARR 592
Query: 695 KGERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTP 516
+ RT R + S + RG + TP + S AR+ G + +TP
Sbjct: 593 RSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 652
Query: 515 ATR 507
A R
Sbjct: 653 ARR 655
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 30.7 bits (66), Expect = 7.7
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -3
Query: 866 RAISRVLPGWXQDDSYRIRXSGRAERGVRAHSPAWSERXTPN*DT---YSVSYEKAPRFP 696
R+ S PGW + + + R R+ R R+HS + + R T S + P
Sbjct: 533 RSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARR 592
Query: 695 KGERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTP 516
+ RT R + S + RG + TP + S AR+ G + +TP
Sbjct: 593 RSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 652
Query: 515 ATR 507
A R
Sbjct: 653 ARR 655
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 30.7 bits (66), Expect = 7.7
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -3
Query: 866 RAISRVLPGWXQDDSYRIRXSGRAERGVRAHSPAWSERXTPN*DT---YSVSYEKAPRFP 696
R+ S PGW + + + R R+ R R+HS + + R T S + P
Sbjct: 533 RSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARR 592
Query: 695 KGERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTP 516
+ RT R + S + RG + TP + S AR+ G + +TP
Sbjct: 593 RSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 652
Query: 515 ATR 507
A R
Sbjct: 653 ARR 655
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 30.7 bits (66), Expect = 7.7
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -3
Query: 866 RAISRVLPGWXQDDSYRIRXSGRAERGVRAHSPAWSERXTPN*DT---YSVSYEKAPRFP 696
R+ S PGW + + + R R+ R R+HS + + R T S + P
Sbjct: 498 RSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARR 557
Query: 695 KGERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTP 516
+ RT R + S + RG + TP + S AR+ G + +TP
Sbjct: 558 RSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 617
Query: 515 ATR 507
A R
Sbjct: 618 ARR 620
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 30.7 bits (66), Expect = 7.7
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -3
Query: 866 RAISRVLPGWXQDDSYRIRXSGRAERGVRAHSPAWSERXTPN*DT---YSVSYEKAPRFP 696
R+ S PGW + + + R R+ R R+HS + + R T S + P
Sbjct: 323 RSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARR 382
Query: 695 KGERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTP 516
+ RT R + S + RG + TP + S AR+ G + +TP
Sbjct: 383 RSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 442
Query: 515 ATR 507
A R
Sbjct: 443 ARR 445
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.7 bits (66), Expect = 7.7
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -3
Query: 866 RAISRVLPGWXQDDSYRIRXSGRAERGVRAHSPAWSERXTPN*DT---YSVSYEKAPRFP 696
R+ S PGW + + + R R+ R R+HS + + R T S + P
Sbjct: 581 RSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARR 640
Query: 695 KGERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTP 516
+ RT R + S + RG + TP + S AR+ G + +TP
Sbjct: 641 RSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 700
Query: 515 ATR 507
A R
Sbjct: 701 ARR 703
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,424,836
Number of Sequences: 237096
Number of extensions: 2864876
Number of successful extensions: 12496
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12495
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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