Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_P12
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 32 0.47
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 32 0.47
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 32 0.47
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 31 0.83
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 31 0.83
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.8
AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical ... 29 5.8
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 751 PXPGGGXXPPPXKXXFXPXXXGGGGPPXPXXREKKXAXPXGGGGV 885
P P PP + P G G PP P R A P GGGG+
Sbjct: 765 PVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGA-PGGGGGM 808
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 751 PXPGGGXXPPPXKXXFXPXXXGGGGPPXPXXREKKXAXPXGGGGV 885
P P PP + P G G PP P R A P GGGG+
Sbjct: 765 PVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGA-PGGGGGM 808
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 751 PXPGGGXXPPPXKXXFXPXXXGGGGPPXPXXREKKXAXPXGGGGV 885
P P PP + P G G PP P R A P GGGG+
Sbjct: 765 PVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGA-PGGGGGM 808
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 751 PXPGGGXXPPPXKXXFXPXXXGGGGPPXPXXREKKXAXPXGGGGV 885
P P PP + P G G PP P R A P GGGG+
Sbjct: 765 PVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGA-PGGGGGM 808
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +1
Query: 757 PGGGXXPPPXKXXFXPXXXGGGGPPXPXXREKKXAXPXG 873
PGGG PP P GGGGP P K A P G
Sbjct: 621 PGGGGGPPRG-----PGGGGGGGPTGPPAPPKPPAKPRG 654
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +1
Query: 757 PGGGXXPPPXKXXFXPXXXGGGGPPXPXXREKKXAXPXG 873
PGGG PP P GGGGP P K A P G
Sbjct: 621 PGGGGGPPRG-----PGGGGGGGPTGPPAPPKPPAKPRG 654
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 489 PNSXXGGXGEPQFXXGXNPQXGXPGEKXPGGP 394
P+ GG G P G + Q G PG K P GP
Sbjct: 128 PSGDAGGNGNPG-SPGQDGQPGAPGNKGPSGP 158
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 489 PNSXXGGXGEPQFXXGXNPQXGXPGEKXPGGP 394
P+ GG G P G + Q G PG K P GP
Sbjct: 161 PSGDAGGNGNPG-SPGQDGQPGAPGNKGPSGP 191
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +1
Query: 751 PXPGG--GXXPPPXKXXFXPXXXGGGGPPXP 837
P P G G PPP F P GG PP P
Sbjct: 308 PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 338
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +1
Query: 751 PXPGG--GXXPPPXKXXFXPXXXGGGGPPXP 837
P P G G PPP F P GG PP P
Sbjct: 318 PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 348
>AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical
protein Y57A10B.1 protein.
Length = 470
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -2
Query: 237 RXQTLNIVNSFFMILIKLTLICCTTVEKRNGVEKRNGXERNK---INXHSLINGVKGQCP 67
R TL +V MIL + + C +EK G+ G RN+ +N +++ V P
Sbjct: 273 RFYTLFVVAIVLMILSAFSTVVCFQLEKSYGLSSSQGELRNRTQPLNVEGVVSDVPPAAP 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,240
Number of Sequences: 27780
Number of extensions: 249640
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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