Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_P11
         (946 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z81070-4|CAB03003.2|  474|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
            R09A8.1 protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
 Frame = +2

Query: 227  FAVTSCQIFRFSTEMMTNYFKCE*DTISSKTPVNFYEKKNHTRIGQLE**RTVIHRRRHN 406
            F   S  I RF    + NY   + DT+S++ P    + KN ++   +E       ++   
Sbjct: 784  FDERSSYIARFKESHLGNYLNSDSDTVSNEKPKTLAQLKNFSKSNLVEYHPKRSRKKIRA 843

Query: 407  MKLSKNKTGFTAGAQNSSNTG--EYRPFLGARLPAKH 511
             ++ + K+  T    ++S        PF   R   +H
Sbjct: 844  KRVYRTKSAVTTACTSTSKQAARSDEPFFSQRDTRQH 880


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 777 ITPKVIHHNDPEKILAKFLTRSVV 848
           +TPK++H + P K  A FLT S V
Sbjct: 374 LTPKLVHESVPSKNAAAFLTASAV 397


>Z81070-4|CAB03003.2|  474|Caenorhabditis elegans Hypothetical
           protein F26E4.5 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +3

Query: 510 IIDKYHSSLCRVSLTRFNYESRAKVIRQHRSTGYKTFIHDYSALSWVAMHLWRLF 674
           +++K ++ L    L  F +E+ + ++R H  T    +       SWV    W+L+
Sbjct: 139 VVEKANNGL--YYLKEFCFENISDLVRYHHQTRASVYKSGIKLFSWVVREEWQLY 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,101,798
Number of Sequences: 27780
Number of extensions: 415657
Number of successful extensions: 934
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)