Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_P11
         (946 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   5.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   5.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.0  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   7.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +3

Query: 471 NIGHSSERASQRNIIDKYHSSLCRVSLTRFNYESRAKVIRQHRSTGYKTFIHDYSALSWV 650
           ++G S+E +  +  +  +      +SLT  NY   A  I+  RS GY   I  Y     +
Sbjct: 176 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGY-YLIQIYIPSGLI 234

Query: 651 AMHLWRLFAWEN 686
            +  W  F W N
Sbjct: 235 VIISWVSF-WLN 245


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +3

Query: 471 NIGHSSERASQRNIIDKYHSSLCRVSLTRFNYESRAKVIRQHRSTGYKTFIHDYSALSWV 650
           ++G S+E +  +  +  +      +SLT  NY   A  I+  RS GY   I  Y     +
Sbjct: 115 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGY-YLIQIYIPSGLI 173

Query: 651 AMHLWRLFAWEN 686
            +  W  F W N
Sbjct: 174 VIISWVSF-WLN 184


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 746 WRTRCTKKPKDHAQSDPSQR 805
           WR  C K  K     DPS R
Sbjct: 371 WRLTCRKCFKSRTNLDPSNR 390


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 746 WRTRCTKKPKDH 781
           W   C+ KPKDH
Sbjct: 23  WALDCSIKPKDH 34


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 5/23 (21%), Positives = 13/23 (56%)
 Frame = -1

Query: 784 GVILWLFCTTSPPRPSXXVLIIS 716
           G+++W+FC     R    + +++
Sbjct: 67  GLVIWIFCAAKSLRTPSNMFVVN 89


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 380 TVIHRRRHNMKLSKNKTGFTAGAQNSSNTG 469
           T+    RH + L K +TG T   Q  S+ G
Sbjct: 747 TISPDSRHLVTLDKQETGVTLVVQEISSDG 776


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,457
Number of Sequences: 438
Number of extensions: 5671
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)