Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_P09
         (1007 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.59 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   9.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -3

Query: 816 PPPPPPXXXXXXXXXXXXKKXXXPPPPPKK 727
           PP PPP            KK   PPPPP +
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSR 319



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 21/89 (23%), Positives = 23/89 (25%)
 Frame = -1

Query: 815 PPPPPPXXXXXXXXXXXXKKXXXPPPPXKKXXXXXXXXXXXXXXXXXXXXXXXXXXXPXX 636
           PP PPP            KK   PPPP  +                              
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLP------------ 337

Query: 635 KXPPPPPXXXXGGGGGXXXXXXKXXPPPP 549
             PPPPP      G        +  PPPP
Sbjct: 338 --PPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 65  KKFLPFGEGSNLVGVPLSNR--LKGTXGRKFQ 154
           K  LP  +GS + G+ LSNR  LKG   +K Q
Sbjct: 84  KDKLPGNDGSQVAGLVLSNRSGLKGREPKKSQ 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,598
Number of Sequences: 5004
Number of extensions: 41323
Number of successful extensions: 266
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)